Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC31.59■■■□□ 2.65
CUX1P39880 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
CUX1P39880 Z82202.1-201ENST00000623446 1880 ntBASIC31.59■■■□□ 2.65
CUX1P39880 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
CUX1P39880 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC31.59■■■□□ 2.65
CUX1P39880 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
CUX1P39880 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC31.59■■■□□ 2.65
CUX1P39880 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC31.59■■■□□ 2.65
CUX1P39880 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC31.59■■■□□ 2.65
CUX1P39880 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
CUX1P39880 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
CUX1P39880 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
CUX1P39880 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
CUX1P39880 CCNC-219ENST00000627680 896 ntTSL 5 BASIC31.59■■■□□ 2.65
CUX1P39880 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
CUX1P39880 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC31.58■■■□□ 2.65
CUX1P39880 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC31.58■■■□□ 2.65
CUX1P39880 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC31.58■■■□□ 2.65
CUX1P39880 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
CUX1P39880 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC31.58■■■□□ 2.65
CUX1P39880 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC31.58■■■□□ 2.65
CUX1P39880 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC31.58■■■□□ 2.65
CUX1P39880 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
CUX1P39880 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC31.58■■■□□ 2.65
CUX1P39880 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC31.58■■■□□ 2.65
CUX1P39880 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
CUX1P39880 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC31.58■■■□□ 2.65
CUX1P39880 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
CUX1P39880 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC31.57■■■□□ 2.64
CUX1P39880 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC31.57■■■□□ 2.64
CUX1P39880 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC31.57■■■□□ 2.64
CUX1P39880 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
CUX1P39880 MIR7706-201ENST00000613747 67 ntBASIC31.57■■■□□ 2.64
CUX1P39880 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
CUX1P39880 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
CUX1P39880 KRT8P32-201ENST00000512863 1461 ntBASIC31.57■■■□□ 2.64
CUX1P39880 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
CUX1P39880 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC31.57■■■□□ 2.64
CUX1P39880 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
CUX1P39880 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC31.56■■■□□ 2.64
CUX1P39880 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC31.56■■■□□ 2.64
CUX1P39880 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
CUX1P39880 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
CUX1P39880 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC31.56■■■□□ 2.64
CUX1P39880 MIR564-202ENST00000385049 94 ntBASIC31.56■■■□□ 2.64
CUX1P39880 TPM1-218ENST00000559281 851 ntTSL 5 BASIC31.56■■■□□ 2.64
CUX1P39880 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC31.56■■■□□ 2.64
CUX1P39880 MIR3180-4-201ENST00000582223 153 ntBASIC31.56■■■□□ 2.64
CUX1P39880 BNIP3P18-201ENST00000593976 575 ntBASIC31.56■■■□□ 2.64
CUX1P39880 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC31.56■■■□□ 2.64
CUX1P39880 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC31.56■■■□□ 2.64
CUX1P39880 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC31.56■■■□□ 2.64
CUX1P39880 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
CUX1P39880 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
CUX1P39880 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC31.56■■■□□ 2.64
CUX1P39880 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC31.56■■■□□ 2.64
CUX1P39880 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
CUX1P39880 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
CUX1P39880 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
CUX1P39880 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
CUX1P39880 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
CUX1P39880 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
CUX1P39880 EMD-201ENST00000369835 966 ntTSL 3 BASIC31.55■■■□□ 2.64
CUX1P39880 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC31.55■■■□□ 2.64
CUX1P39880 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC31.55■■■□□ 2.64
CUX1P39880 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC31.55■■■□□ 2.64
CUX1P39880 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC31.55■■■□□ 2.64
CUX1P39880 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC31.55■■■□□ 2.64
CUX1P39880 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC31.55■■■□□ 2.64
CUX1P39880 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
CUX1P39880 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
CUX1P39880 IL9RP2-201ENST00000423948 1312 ntBASIC31.55■■■□□ 2.64
CUX1P39880 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC31.55■■■□□ 2.64
CUX1P39880 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC31.54■■■□□ 2.64
CUX1P39880 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC31.54■■■□□ 2.64
CUX1P39880 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC31.54■■■□□ 2.64
CUX1P39880 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC31.54■■■□□ 2.64
CUX1P39880 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
CUX1P39880 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC31.54■■■□□ 2.64
CUX1P39880 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
CUX1P39880 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC31.54■■■□□ 2.64
CUX1P39880 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC31.54■■■□□ 2.64
CUX1P39880 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
CUX1P39880 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC31.54■■■□□ 2.64
CUX1P39880 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC31.54■■■□□ 2.64
CUX1P39880 PMS2P1-201ENST00000431037 1228 ntBASIC31.54■■■□□ 2.64
CUX1P39880 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC31.54■■■□□ 2.64
CUX1P39880 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
CUX1P39880 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC31.53■■■□□ 2.64
CUX1P39880 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC31.53■■■□□ 2.64
CUX1P39880 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
CUX1P39880 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC31.53■■■□□ 2.64
CUX1P39880 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
CUX1P39880 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC31.53■■■□□ 2.64
CUX1P39880 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC31.53■■■□□ 2.64
CUX1P39880 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
CUX1P39880 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC31.53■■■□□ 2.64
CUX1P39880 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC31.53■■■□□ 2.64
CUX1P39880 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC31.53■■■□□ 2.64
CUX1P39880 AC006333.2-201ENST00000607957 2099 ntBASIC31.53■■■□□ 2.64
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms