Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC18■□□□□ 0.47
MSX2P35548 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
MSX2P35548 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
MSX2P35548 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
MSX2P35548 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
MSX2P35548 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC18■□□□□ 0.47
MSX2P35548 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
MSX2P35548 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC18■□□□□ 0.47
MSX2P35548 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC18■□□□□ 0.47
MSX2P35548 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC18■□□□□ 0.47
MSX2P35548 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC18■□□□□ 0.47
MSX2P35548 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
MSX2P35548 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
MSX2P35548 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
MSX2P35548 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
MSX2P35548 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
MSX2P35548 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
MSX2P35548 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
MSX2P35548 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC17.99■□□□□ 0.47
MSX2P35548 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
MSX2P35548 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
MSX2P35548 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
MSX2P35548 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
MSX2P35548 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
MSX2P35548 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC17.99■□□□□ 0.47
MSX2P35548 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
MSX2P35548 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
MSX2P35548 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC17.99■□□□□ 0.47
MSX2P35548 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
MSX2P35548 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
MSX2P35548 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
MSX2P35548 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
MSX2P35548 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
MSX2P35548 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC17.99■□□□□ 0.47
MSX2P35548 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
MSX2P35548 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC17.99■□□□□ 0.47
MSX2P35548 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
MSX2P35548 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
MSX2P35548 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC17.99■□□□□ 0.47
MSX2P35548 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC17.99■□□□□ 0.47
MSX2P35548 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC17.99■□□□□ 0.47
MSX2P35548 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
MSX2P35548 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC17.98■□□□□ 0.47
MSX2P35548 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC17.98■□□□□ 0.47
MSX2P35548 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC17.98■□□□□ 0.47
MSX2P35548 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
MSX2P35548 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
MSX2P35548 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC17.98■□□□□ 0.47
MSX2P35548 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
MSX2P35548 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
MSX2P35548 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
MSX2P35548 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
MSX2P35548 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
MSX2P35548 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
MSX2P35548 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
MSX2P35548 OR10C1-204ENST00000622521 1039 ntBASIC17.98■□□□□ 0.47
MSX2P35548 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
MSX2P35548 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
MSX2P35548 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC17.98■□□□□ 0.47
MSX2P35548 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
MSX2P35548 AC135776.1-201ENST00000319817 2481 ntBASIC17.98■□□□□ 0.47
MSX2P35548 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
MSX2P35548 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
MSX2P35548 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC17.98■□□□□ 0.47
MSX2P35548 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
MSX2P35548 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.98■□□□□ 0.47
MSX2P35548 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC17.98■□□□□ 0.47
MSX2P35548 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC17.98■□□□□ 0.47
MSX2P35548 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
MSX2P35548 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
MSX2P35548 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC17.97■□□□□ 0.47
MSX2P35548 PCDHA12-202ENST00000613593 2588 ntBASIC17.97■□□□□ 0.47
MSX2P35548 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
MSX2P35548 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
MSX2P35548 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
MSX2P35548 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
MSX2P35548 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
MSX2P35548 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
MSX2P35548 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC17.97■□□□□ 0.47
MSX2P35548 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.97■□□□□ 0.47
MSX2P35548 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC17.97■□□□□ 0.47
MSX2P35548 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
MSX2P35548 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
MSX2P35548 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
MSX2P35548 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
MSX2P35548 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
MSX2P35548 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
MSX2P35548 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC17.97■□□□□ 0.47
MSX2P35548 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
MSX2P35548 LSM12P1-201ENST00000411836 588 ntBASIC17.97■□□□□ 0.47
MSX2P35548 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC17.97■□□□□ 0.47
MSX2P35548 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC17.97■□□□□ 0.47
MSX2P35548 LGR4-203ENST00000480977 492 ntTSL 2 BASIC17.97■□□□□ 0.47
MSX2P35548 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC17.97■□□□□ 0.47
MSX2P35548 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC17.97■□□□□ 0.47
MSX2P35548 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
MSX2P35548 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
MSX2P35548 FST-202ENST00000396947 2538 ntTSL 5 BASIC17.97■□□□□ 0.47
MSX2P35548 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
MSX2P35548 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms