Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC17.27■□□□□ 0.36
MSX1P28360 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
MSX1P28360 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC17.27■□□□□ 0.36
MSX1P28360 TSPY14P-201ENST00000303979 915 ntBASIC17.27■□□□□ 0.36
MSX1P28360 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC17.27■□□□□ 0.36
MSX1P28360 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
MSX1P28360 SLC25A1P2-201ENST00000430693 912 ntBASIC17.27■□□□□ 0.36
MSX1P28360 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
MSX1P28360 FDX2-206ENST00000492239 773 ntTSL 2 BASIC17.27■□□□□ 0.36
MSX1P28360 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC17.27■□□□□ 0.36
MSX1P28360 EGLN1P1-201ENST00000531623 762 ntBASIC17.27■□□□□ 0.36
MSX1P28360 LTBR-211ENST00000543190 785 ntTSL 3 BASIC17.27■□□□□ 0.36
MSX1P28360 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
MSX1P28360 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC17.27■□□□□ 0.36
MSX1P28360 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.36
MSX1P28360 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.36
MSX1P28360 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC17.27■□□□□ 0.35
MSX1P28360 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
MSX1P28360 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC17.27■□□□□ 0.35
MSX1P28360 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
MSX1P28360 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
MSX1P28360 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
MSX1P28360 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
MSX1P28360 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.35
MSX1P28360 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC17.27■□□□□ 0.35
MSX1P28360 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSX1P28360 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC17.26■□□□□ 0.35
MSX1P28360 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC17.26■□□□□ 0.35
MSX1P28360 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSX1P28360 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
MSX1P28360 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
MSX1P28360 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSX1P28360 LGALS8-AS1-201ENST00000487567 1457 ntBASIC17.26■□□□□ 0.35
MSX1P28360 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
MSX1P28360 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSX1P28360 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC17.26■□□□□ 0.35
MSX1P28360 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSX1P28360 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSX1P28360 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
MSX1P28360 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSX1P28360 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC17.26■□□□□ 0.35
MSX1P28360 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSX1P28360 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC17.26■□□□□ 0.35
MSX1P28360 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSX1P28360 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC17.26■□□□□ 0.35
MSX1P28360 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
MSX1P28360 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
MSX1P28360 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSX1P28360 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSX1P28360 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
MSX1P28360 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSX1P28360 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
MSX1P28360 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSX1P28360 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
MSX1P28360 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
MSX1P28360 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSX1P28360 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
MSX1P28360 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSX1P28360 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
MSX1P28360 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
MSX1P28360 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
MSX1P28360 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
MSX1P28360 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
MSX1P28360 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC17.25■□□□□ 0.35
MSX1P28360 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
MSX1P28360 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
MSX1P28360 KATNBL1P6-202ENST00000562413 1466 ntBASIC17.25■□□□□ 0.35
MSX1P28360 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
MSX1P28360 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
MSX1P28360 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
MSX1P28360 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
MSX1P28360 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
MSX1P28360 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
MSX1P28360 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
MSX1P28360 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
MSX1P28360 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
MSX1P28360 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
MSX1P28360 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
MSX1P28360 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
MSX1P28360 CCR12P-201ENST00000446203 998 ntBASIC17.25■□□□□ 0.35
MSX1P28360 TSPY17P-201ENST00000450329 467 ntBASIC17.25■□□□□ 0.35
MSX1P28360 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
MSX1P28360 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC17.25■□□□□ 0.35
MSX1P28360 AC006011.2-201ENST00000621313 1158 ntBASIC17.25■□□□□ 0.35
MSX1P28360 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
MSX1P28360 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC17.25■□□□□ 0.35
MSX1P28360 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
MSX1P28360 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC17.25■□□□□ 0.35
MSX1P28360 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC17.25■□□□□ 0.35
MSX1P28360 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
MSX1P28360 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
MSX1P28360 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
MSX1P28360 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
MSX1P28360 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
MSX1P28360 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC17.25■□□□□ 0.35
MSX1P28360 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
MSX1P28360 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
MSX1P28360 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
MSX1P28360 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MSX1P28360 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms