Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
ERCC3P19447 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
ERCC3P19447 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC21.8■■□□□ 1.08
ERCC3P19447 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
ERCC3P19447 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
ERCC3P19447 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
ERCC3P19447 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
ERCC3P19447 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
ERCC3P19447 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
ERCC3P19447 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC21.8■■□□□ 1.08
ERCC3P19447 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
ERCC3P19447 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
ERCC3P19447 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC21.8■■□□□ 1.08
ERCC3P19447 SPDYE13P-201ENST00000445314 798 ntBASIC21.8■■□□□ 1.08
ERCC3P19447 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC21.8■■□□□ 1.08
ERCC3P19447 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
ERCC3P19447 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC21.8■■□□□ 1.08
ERCC3P19447 CLEC4GP1-201ENST00000596555 870 ntBASIC21.8■■□□□ 1.08
ERCC3P19447 FGF14-AS2-201ENST00000606448 1074 ntBASIC21.8■■□□□ 1.08
ERCC3P19447 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC21.8■■□□□ 1.08
ERCC3P19447 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC21.8■■□□□ 1.08
ERCC3P19447 SDHAP1-207ENST00000440850 2000 ntBASIC21.8■■□□□ 1.08
ERCC3P19447 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
ERCC3P19447 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
ERCC3P19447 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
ERCC3P19447 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
ERCC3P19447 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
ERCC3P19447 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
ERCC3P19447 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC21.8■■□□□ 1.08
ERCC3P19447 PWWP2AP1-201ENST00000429776 2273 ntBASIC21.8■■□□□ 1.08
ERCC3P19447 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
ERCC3P19447 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
ERCC3P19447 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
ERCC3P19447 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
ERCC3P19447 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC21.79■■□□□ 1.08
ERCC3P19447 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
ERCC3P19447 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
ERCC3P19447 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC21.79■■□□□ 1.08
ERCC3P19447 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC21.79■■□□□ 1.08
ERCC3P19447 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
ERCC3P19447 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
ERCC3P19447 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC21.79■■□□□ 1.08
ERCC3P19447 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC21.79■■□□□ 1.08
ERCC3P19447 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC21.79■■□□□ 1.08
ERCC3P19447 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
ERCC3P19447 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
ERCC3P19447 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
ERCC3P19447 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
ERCC3P19447 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
ERCC3P19447 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC21.79■■□□□ 1.08
ERCC3P19447 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
ERCC3P19447 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
ERCC3P19447 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC21.78■■□□□ 1.08
ERCC3P19447 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
ERCC3P19447 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
ERCC3P19447 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC21.78■■□□□ 1.08
ERCC3P19447 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC21.78■■□□□ 1.08
ERCC3P19447 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
ERCC3P19447 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC21.78■■□□□ 1.08
ERCC3P19447 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
ERCC3P19447 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
ERCC3P19447 AL450487.1-201ENST00000426799 995 ntBASIC21.78■■□□□ 1.08
ERCC3P19447 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
ERCC3P19447 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC21.78■■□□□ 1.08
ERCC3P19447 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC21.78■■□□□ 1.08
ERCC3P19447 NDUFV2-AS1-203ENST00000608008 779 ntBASIC21.78■■□□□ 1.08
ERCC3P19447 CLN6-214ENST00000636314 442 ntTSL 3 BASIC21.78■■□□□ 1.08
ERCC3P19447 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
ERCC3P19447 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
ERCC3P19447 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC21.78■■□□□ 1.08
ERCC3P19447 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
ERCC3P19447 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
ERCC3P19447 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC21.78■■□□□ 1.08
ERCC3P19447 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC21.78■■□□□ 1.08
ERCC3P19447 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
ERCC3P19447 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
ERCC3P19447 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
ERCC3P19447 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
ERCC3P19447 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
ERCC3P19447 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
ERCC3P19447 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
ERCC3P19447 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
ERCC3P19447 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
ERCC3P19447 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
ERCC3P19447 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
ERCC3P19447 TSPY21P-201ENST00000433481 731 ntBASIC21.77■■□□□ 1.08
ERCC3P19447 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC21.77■■□□□ 1.08
ERCC3P19447 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC21.77■■□□□ 1.08
ERCC3P19447 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC21.77■■□□□ 1.08
ERCC3P19447 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
ERCC3P19447 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC21.77■■□□□ 1.08
ERCC3P19447 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
ERCC3P19447 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
ERCC3P19447 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
ERCC3P19447 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
ERCC3P19447 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
ERCC3P19447 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.07
ERCC3P19447 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.07
ERCC3P19447 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC21.76■■□□□ 1.07
ERCC3P19447 AC007952.6-201ENST00000573168 2673 ntBASIC21.76■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms