Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC20.78■□□□□ 0.92
TPM1P09493 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC20.78■□□□□ 0.92
TPM1P09493 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC20.78■□□□□ 0.92
TPM1P09493 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
TPM1P09493 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC20.78■□□□□ 0.92
TPM1P09493 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
TPM1P09493 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
TPM1P09493 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
TPM1P09493 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
TPM1P09493 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
TPM1P09493 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC20.77■□□□□ 0.92
TPM1P09493 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC20.77■□□□□ 0.92
TPM1P09493 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
TPM1P09493 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TPM1P09493 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TPM1P09493 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC20.77■□□□□ 0.92
TPM1P09493 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC20.77■□□□□ 0.92
TPM1P09493 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
TPM1P09493 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC20.77■□□□□ 0.92
TPM1P09493 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
TPM1P09493 DUSP5P2-201ENST00000426873 1033 ntBASIC20.77■□□□□ 0.92
TPM1P09493 ABHD17AP6-201ENST00000458502 1044 ntBASIC20.77■□□□□ 0.92
TPM1P09493 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
TPM1P09493 PNN-205ENST00000556530 601 ntTSL 2 BASIC20.77■□□□□ 0.92
TPM1P09493 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC20.77■□□□□ 0.92
TPM1P09493 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC20.77■□□□□ 0.92
TPM1P09493 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TPM1P09493 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
TPM1P09493 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC20.77■□□□□ 0.92
TPM1P09493 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TPM1P09493 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TPM1P09493 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC20.77■□□□□ 0.91
TPM1P09493 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
TPM1P09493 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
TPM1P09493 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
TPM1P09493 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC20.77■□□□□ 0.91
TPM1P09493 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.91
TPM1P09493 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
TPM1P09493 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC20.77■□□□□ 0.91
TPM1P09493 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
TPM1P09493 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
TPM1P09493 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TPM1P09493 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TPM1P09493 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
TPM1P09493 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
TPM1P09493 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
TPM1P09493 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
TPM1P09493 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
TPM1P09493 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
TPM1P09493 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
TPM1P09493 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC20.76■□□□□ 0.91
TPM1P09493 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
TPM1P09493 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC20.76■□□□□ 0.91
TPM1P09493 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC20.76■□□□□ 0.91
TPM1P09493 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC20.76■□□□□ 0.91
TPM1P09493 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC20.76■□□□□ 0.91
TPM1P09493 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TPM1P09493 AC068880.1-201ENST00000507289 2297 ntBASIC20.76■□□□□ 0.91
TPM1P09493 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC20.76■□□□□ 0.91
TPM1P09493 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TPM1P09493 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
TPM1P09493 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
TPM1P09493 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TPM1P09493 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC20.76■□□□□ 0.91
TPM1P09493 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
TPM1P09493 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
TPM1P09493 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
TPM1P09493 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
TPM1P09493 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC20.75■□□□□ 0.91
TPM1P09493 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TPM1P09493 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TPM1P09493 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
TPM1P09493 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC20.75■□□□□ 0.91
TPM1P09493 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
TPM1P09493 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC20.75■□□□□ 0.91
TPM1P09493 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TPM1P09493 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
TPM1P09493 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC20.75■□□□□ 0.91
TPM1P09493 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC20.75■□□□□ 0.91
TPM1P09493 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC20.75■□□□□ 0.91
TPM1P09493 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TPM1P09493 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC20.75■□□□□ 0.91
TPM1P09493 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC20.75■□□□□ 0.91
TPM1P09493 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC20.75■□□□□ 0.91
TPM1P09493 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
TPM1P09493 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TPM1P09493 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TPM1P09493 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
TPM1P09493 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TPM1P09493 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TPM1P09493 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TPM1P09493 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
TPM1P09493 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC20.75■□□□□ 0.91
TPM1P09493 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
TPM1P09493 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TPM1P09493 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC20.74■□□□□ 0.91
TPM1P09493 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TPM1P09493 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC20.74■□□□□ 0.91
TPM1P09493 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
TPM1P09493 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms