Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
CXCL1P09341 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
CXCL1P09341 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CXCL1P09341 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CXCL1P09341 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CXCL1P09341 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CXCL1P09341 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC14.64□□□□□ -0.07
CXCL1P09341 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
CXCL1P09341 AC104187.1-201ENST00000607510 612 ntBASIC14.64□□□□□ -0.07
CXCL1P09341 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
CXCL1P09341 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC14.64□□□□□ -0.07
CXCL1P09341 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
CXCL1P09341 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CXCL1P09341 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC14.64□□□□□ -0.07
CXCL1P09341 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CXCL1P09341 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CXCL1P09341 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CXCL1P09341 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CXCL1P09341 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
CXCL1P09341 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CXCL1P09341 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC14.64□□□□□ -0.07
CXCL1P09341 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC14.64□□□□□ -0.07
CXCL1P09341 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC14.64□□□□□ -0.07
CXCL1P09341 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
CXCL1P09341 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC14.64□□□□□ -0.07
CXCL1P09341 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC14.64□□□□□ -0.07
CXCL1P09341 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC14.64□□□□□ -0.07
CXCL1P09341 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
CXCL1P09341 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
CXCL1P09341 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC14.63□□□□□ -0.07
CXCL1P09341 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CXCL1P09341 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CXCL1P09341 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CXCL1P09341 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC14.63□□□□□ -0.07
CXCL1P09341 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
CXCL1P09341 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CXCL1P09341 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CXCL1P09341 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CXCL1P09341 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
CXCL1P09341 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CXCL1P09341 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC14.63□□□□□ -0.07
CXCL1P09341 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC14.63□□□□□ -0.07
CXCL1P09341 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC14.63□□□□□ -0.07
CXCL1P09341 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC14.63□□□□□ -0.07
CXCL1P09341 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC14.63□□□□□ -0.07
CXCL1P09341 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC14.63□□□□□ -0.07
CXCL1P09341 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC14.63□□□□□ -0.07
CXCL1P09341 AL031432.3-201ENST00000607698 485 ntBASIC14.63□□□□□ -0.07
CXCL1P09341 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
CXCL1P09341 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CXCL1P09341 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC14.63□□□□□ -0.07
CXCL1P09341 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CXCL1P09341 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
CXCL1P09341 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
CXCL1P09341 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CXCL1P09341 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CXCL1P09341 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC14.63□□□□□ -0.07
CXCL1P09341 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC14.63□□□□□ -0.07
CXCL1P09341 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CXCL1P09341 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CXCL1P09341 ANKRD26P3-201ENST00000454044 2748 ntBASIC14.63□□□□□ -0.07
CXCL1P09341 MST1L-201ENST00000442552 2185 ntBASIC14.63□□□□□ -0.07
CXCL1P09341 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CXCL1P09341 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC14.62□□□□□ -0.07
CXCL1P09341 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
CXCL1P09341 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CXCL1P09341 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CXCL1P09341 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CXCL1P09341 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC14.62□□□□□ -0.07
CXCL1P09341 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CXCL1P09341 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
CXCL1P09341 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
CXCL1P09341 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CXCL1P09341 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CXCL1P09341 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
CXCL1P09341 LINC02228-203ENST00000641970 1355 ntBASIC14.62□□□□□ -0.07
CXCL1P09341 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CXCL1P09341 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC14.62□□□□□ -0.07
CXCL1P09341 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC14.62□□□□□ -0.07
CXCL1P09341 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
CXCL1P09341 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC14.62□□□□□ -0.07
CXCL1P09341 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CXCL1P09341 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CXCL1P09341 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CXCL1P09341 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC14.62□□□□□ -0.07
CXCL1P09341 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CXCL1P09341 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC14.62□□□□□ -0.07
CXCL1P09341 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
CXCL1P09341 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
CXCL1P09341 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CXCL1P09341 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
CXCL1P09341 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC14.62□□□□□ -0.07
CXCL1P09341 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
CXCL1P09341 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CXCL1P09341 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CXCL1P09341 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
CXCL1P09341 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC14.62□□□□□ -0.07
CXCL1P09341 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC14.62□□□□□ -0.07
CXCL1P09341 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC14.62□□□□□ -0.07
CXCL1P09341 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC14.62□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms