Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC18.5■□□□□ 0.55
VPS4BO75351 RN7SL850P-201ENST00000579959 291 ntBASIC18.5■□□□□ 0.55
VPS4BO75351 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC18.5■□□□□ 0.55
VPS4BO75351 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC18.5■□□□□ 0.55
VPS4BO75351 KLF2-202ENST00000592003 564 ntTSL 3 BASIC18.5■□□□□ 0.55
VPS4BO75351 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
VPS4BO75351 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS4BO75351 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
VPS4BO75351 AC135050.7-201ENST00000624508 2218 ntBASIC18.5■□□□□ 0.55
VPS4BO75351 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC18.5■□□□□ 0.55
VPS4BO75351 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC18.5■□□□□ 0.55
VPS4BO75351 AC090340.1-201ENST00000620778 4980 ntBASIC18.5■□□□□ 0.55
VPS4BO75351 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS4BO75351 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS4BO75351 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
VPS4BO75351 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS4BO75351 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS4BO75351 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
VPS4BO75351 AC005082.1-201ENST00000413042 2259 ntBASIC18.49■□□□□ 0.55
VPS4BO75351 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC18.49■□□□□ 0.55
VPS4BO75351 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS4BO75351 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS4BO75351 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS4BO75351 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC18.49■□□□□ 0.55
VPS4BO75351 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS4BO75351 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS4BO75351 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
VPS4BO75351 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC18.49■□□□□ 0.55
VPS4BO75351 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
VPS4BO75351 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC18.49■□□□□ 0.55
VPS4BO75351 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC18.49■□□□□ 0.55
VPS4BO75351 AC120498.8-201ENST00000614275 531 ntBASIC18.49■□□□□ 0.55
VPS4BO75351 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
VPS4BO75351 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS4BO75351 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC18.49■□□□□ 0.55
VPS4BO75351 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
VPS4BO75351 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS4BO75351 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
VPS4BO75351 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS4BO75351 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
VPS4BO75351 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
VPS4BO75351 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
VPS4BO75351 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS4BO75351 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
VPS4BO75351 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC18.49■□□□□ 0.55
VPS4BO75351 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC18.48■□□□□ 0.55
VPS4BO75351 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VPS4BO75351 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VPS4BO75351 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
VPS4BO75351 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC18.48■□□□□ 0.55
VPS4BO75351 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VPS4BO75351 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
VPS4BO75351 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VPS4BO75351 TREX2-204ENST00000370212 861 ntTSL 5 BASIC18.48■□□□□ 0.55
VPS4BO75351 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
VPS4BO75351 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
VPS4BO75351 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC18.48■□□□□ 0.55
VPS4BO75351 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VPS4BO75351 PNN-205ENST00000556530 601 ntTSL 2 BASIC18.48■□□□□ 0.55
VPS4BO75351 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
VPS4BO75351 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
VPS4BO75351 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC18.48■□□□□ 0.55
VPS4BO75351 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC18.48■□□□□ 0.55
VPS4BO75351 AC083906.6-201ENST00000641366 219 ntBASIC18.48■□□□□ 0.55
VPS4BO75351 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VPS4BO75351 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC18.48■□□□□ 0.55
VPS4BO75351 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC18.48■□□□□ 0.55
VPS4BO75351 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VPS4BO75351 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
VPS4BO75351 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
VPS4BO75351 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VPS4BO75351 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC18.48■□□□□ 0.55
VPS4BO75351 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VPS4BO75351 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC18.47■□□□□ 0.55
VPS4BO75351 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC18.47■□□□□ 0.55
VPS4BO75351 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VPS4BO75351 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VPS4BO75351 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VPS4BO75351 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VPS4BO75351 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VPS4BO75351 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VPS4BO75351 MMP23A-201ENST00000234610 1017 ntBASIC18.47■□□□□ 0.55
VPS4BO75351 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
VPS4BO75351 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VPS4BO75351 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VPS4BO75351 AL355355.2-201ENST00000442321 338 ntBASIC18.47■□□□□ 0.55
VPS4BO75351 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VPS4BO75351 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC18.47■□□□□ 0.55
VPS4BO75351 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VPS4BO75351 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC18.47■□□□□ 0.55
VPS4BO75351 AL121829.2-201ENST00000620908 328 ntBASIC18.47■□□□□ 0.55
VPS4BO75351 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VPS4BO75351 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VPS4BO75351 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
VPS4BO75351 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VPS4BO75351 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VPS4BO75351 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VPS4BO75351 AC104581.1-202ENST00000635932 2618 ntBASIC18.47■□□□□ 0.55
VPS4BO75351 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
VPS4BO75351 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms