Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC18.91■□□□□ 0.62
SHOX2O60902 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
SHOX2O60902 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SHOX2O60902 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SHOX2O60902 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SHOX2O60902 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SHOX2O60902 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC18.9■□□□□ 0.62
SHOX2O60902 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SHOX2O60902 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SHOX2O60902 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
SHOX2O60902 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SHOX2O60902 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SHOX2O60902 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SHOX2O60902 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SHOX2O60902 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SHOX2O60902 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SHOX2O60902 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC18.9■□□□□ 0.62
SHOX2O60902 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SHOX2O60902 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC18.9■□□□□ 0.62
SHOX2O60902 AL139246.5-201ENST00000606645 996 ntBASIC18.9■□□□□ 0.62
SHOX2O60902 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SHOX2O60902 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC18.9■□□□□ 0.62
SHOX2O60902 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
SHOX2O60902 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC18.9■□□□□ 0.62
SHOX2O60902 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SHOX2O60902 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SHOX2O60902 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SHOX2O60902 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SHOX2O60902 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
SHOX2O60902 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SHOX2O60902 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SHOX2O60902 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SHOX2O60902 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
SHOX2O60902 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.62
SHOX2O60902 TFP1-202ENST00000475455 1573 ntBASIC18.89■□□□□ 0.62
SHOX2O60902 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC18.89■□□□□ 0.61
SHOX2O60902 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SHOX2O60902 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC18.89■□□□□ 0.61
SHOX2O60902 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SHOX2O60902 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SHOX2O60902 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC18.89■□□□□ 0.61
SHOX2O60902 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SHOX2O60902 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC18.89■□□□□ 0.61
SHOX2O60902 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC18.89■□□□□ 0.61
SHOX2O60902 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
SHOX2O60902 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
SHOX2O60902 RALB-208ENST00000631312 311 ntTSL 5 BASIC18.89■□□□□ 0.61
SHOX2O60902 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC18.89■□□□□ 0.61
SHOX2O60902 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC18.89■□□□□ 0.61
SHOX2O60902 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SHOX2O60902 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SHOX2O60902 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC18.89■□□□□ 0.61
SHOX2O60902 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SHOX2O60902 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
SHOX2O60902 FLJ13224-201ENST00000313737 1514 ntBASIC18.89■□□□□ 0.61
SHOX2O60902 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC18.89■□□□□ 0.61
SHOX2O60902 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC18.89■□□□□ 0.61
SHOX2O60902 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SHOX2O60902 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC18.89■□□□□ 0.61
SHOX2O60902 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SHOX2O60902 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC18.89■□□□□ 0.61
SHOX2O60902 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
SHOX2O60902 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SHOX2O60902 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC18.89■□□□□ 0.61
SHOX2O60902 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC18.88■□□□□ 0.61
SHOX2O60902 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
SHOX2O60902 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC18.88■□□□□ 0.61
SHOX2O60902 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
SHOX2O60902 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SHOX2O60902 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SHOX2O60902 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC18.88■□□□□ 0.61
SHOX2O60902 REXO1L9P-201ENST00000604264 2108 ntBASIC18.88■□□□□ 0.61
SHOX2O60902 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SHOX2O60902 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC18.88■□□□□ 0.61
SHOX2O60902 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SHOX2O60902 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
SHOX2O60902 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC18.88■□□□□ 0.61
SHOX2O60902 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
SHOX2O60902 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
SHOX2O60902 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
SHOX2O60902 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC18.88■□□□□ 0.61
SHOX2O60902 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SHOX2O60902 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SHOX2O60902 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SHOX2O60902 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SHOX2O60902 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SHOX2O60902 LINC00602-201ENST00000629776 2065 ntBASIC18.88■□□□□ 0.61
SHOX2O60902 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
SHOX2O60902 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC18.88■□□□□ 0.61
SHOX2O60902 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SHOX2O60902 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
SHOX2O60902 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SHOX2O60902 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
SHOX2O60902 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SHOX2O60902 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SHOX2O60902 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC18.87■□□□□ 0.61
SHOX2O60902 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
SHOX2O60902 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SHOX2O60902 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SHOX2O60902 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms