Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PRKNO60260 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PRKNO60260 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
PRKNO60260 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC17.55■□□□□ 0.4
PRKNO60260 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC17.55■□□□□ 0.4
PRKNO60260 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
PRKNO60260 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PRKNO60260 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC17.54■□□□□ 0.4
PRKNO60260 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
PRKNO60260 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
PRKNO60260 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PRKNO60260 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC17.54■□□□□ 0.4
PRKNO60260 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC17.54■□□□□ 0.4
PRKNO60260 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PRKNO60260 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PRKNO60260 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PRKNO60260 TMPOP1-202ENST00000424642 1267 ntBASIC17.54■□□□□ 0.4
PRKNO60260 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
PRKNO60260 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PRKNO60260 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC17.54■□□□□ 0.4
PRKNO60260 AC092865.7-201ENST00000641832 219 ntBASIC17.54■□□□□ 0.4
PRKNO60260 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC17.54■□□□□ 0.4
PRKNO60260 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PRKNO60260 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
PRKNO60260 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC17.54■□□□□ 0.4
PRKNO60260 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PRKNO60260 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
PRKNO60260 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC17.54■□□□□ 0.4
PRKNO60260 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PRKNO60260 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PRKNO60260 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PRKNO60260 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PRKNO60260 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PRKNO60260 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
PRKNO60260 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
PRKNO60260 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
PRKNO60260 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC17.53■□□□□ 0.4
PRKNO60260 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
PRKNO60260 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
PRKNO60260 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PRKNO60260 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
PRKNO60260 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC17.53■□□□□ 0.4
PRKNO60260 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PRKNO60260 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PRKNO60260 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
PRKNO60260 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC17.53■□□□□ 0.4
PRKNO60260 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC17.53■□□□□ 0.4
PRKNO60260 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC17.53■□□□□ 0.4
PRKNO60260 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC17.53■□□□□ 0.4
PRKNO60260 RBM42-202ENST00000586618 771 ntTSL 3 BASIC17.53■□□□□ 0.4
PRKNO60260 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC17.53■□□□□ 0.4
PRKNO60260 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
PRKNO60260 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC17.53■□□□□ 0.4
PRKNO60260 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC17.53■□□□□ 0.4
PRKNO60260 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
PRKNO60260 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
PRKNO60260 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC17.53■□□□□ 0.4
PRKNO60260 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PRKNO60260 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PRKNO60260 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC17.52■□□□□ 0.4
PRKNO60260 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
PRKNO60260 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PRKNO60260 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PRKNO60260 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC17.52■□□□□ 0.4
PRKNO60260 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
PRKNO60260 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PRKNO60260 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PRKNO60260 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
PRKNO60260 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
PRKNO60260 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC17.52■□□□□ 0.4
PRKNO60260 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC17.52■□□□□ 0.4
PRKNO60260 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC17.52■□□□□ 0.4
PRKNO60260 GXYLT1P6-201ENST00000456472 1187 ntBASIC17.52■□□□□ 0.4
PRKNO60260 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC17.52■□□□□ 0.4
PRKNO60260 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC17.52■□□□□ 0.4
PRKNO60260 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
PRKNO60260 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PRKNO60260 KRT8P45-201ENST00000414328 1447 ntBASIC17.52■□□□□ 0.4
PRKNO60260 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC17.52■□□□□ 0.4
PRKNO60260 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
PRKNO60260 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.39
PRKNO60260 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC17.52■□□□□ 0.39
PRKNO60260 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC17.52■□□□□ 0.39
PRKNO60260 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
PRKNO60260 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
PRKNO60260 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PRKNO60260 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PRKNO60260 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PRKNO60260 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC17.51■□□□□ 0.39
PRKNO60260 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PRKNO60260 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PRKNO60260 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
PRKNO60260 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PRKNO60260 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
PRKNO60260 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PRKNO60260 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PRKNO60260 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PRKNO60260 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC17.51■□□□□ 0.39
PRKNO60260 LIN28AP1-201ENST00000429574 405 ntBASIC17.51■□□□□ 0.39
PRKNO60260 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms