Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
SSX4O60224 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
SSX4O60224 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SSX4O60224 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
SSX4O60224 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SSX4O60224 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SSX4O60224 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
SSX4O60224 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
SSX4O60224 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC17.09■□□□□ 0.33
SSX4O60224 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SSX4O60224 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
SSX4O60224 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SSX4O60224 MOK-225ENST00000522867 1883 ntTSL 5 BASIC17.09■□□□□ 0.33
SSX4O60224 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SSX4O60224 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
SSX4O60224 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
SSX4O60224 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
SSX4O60224 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SSX4O60224 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.33
SSX4O60224 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
SSX4O60224 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC17.08■□□□□ 0.33
SSX4O60224 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
SSX4O60224 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
SSX4O60224 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC17.08■□□□□ 0.33
SSX4O60224 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.33
SSX4O60224 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
SSX4O60224 AL161938.1-201ENST00000569833 2180 ntBASIC17.08■□□□□ 0.33
SSX4O60224 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
SSX4O60224 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC17.08■□□□□ 0.33
SSX4O60224 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
SSX4O60224 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
SSX4O60224 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
SSX4O60224 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC17.08■□□□□ 0.32
SSX4O60224 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
SSX4O60224 KRT17P2-201ENST00000300992 1314 ntBASIC17.08■□□□□ 0.32
SSX4O60224 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SSX4O60224 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
SSX4O60224 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SSX4O60224 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
SSX4O60224 AC133681.1-201ENST00000465482 601 ntBASIC17.08■□□□□ 0.32
SSX4O60224 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SSX4O60224 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
SSX4O60224 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC17.08■□□□□ 0.32
SSX4O60224 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
SSX4O60224 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SSX4O60224 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SSX4O60224 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SSX4O60224 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
SSX4O60224 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SSX4O60224 AIRN-201ENST00000601203 4374 ntBASIC17.07■□□□□ 0.32
SSX4O60224 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC17.07■□□□□ 0.32
SSX4O60224 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SSX4O60224 EFTUD1P1-204ENST00000560401 1798 ntBASIC17.07■□□□□ 0.32
SSX4O60224 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC17.07■□□□□ 0.32
SSX4O60224 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC17.07■□□□□ 0.32
SSX4O60224 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
SSX4O60224 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
SSX4O60224 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SSX4O60224 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC17.07■□□□□ 0.32
SSX4O60224 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC17.07■□□□□ 0.32
SSX4O60224 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SSX4O60224 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
SSX4O60224 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SSX4O60224 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC17.07■□□□□ 0.32
SSX4O60224 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SSX4O60224 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SSX4O60224 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
SSX4O60224 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
SSX4O60224 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
SSX4O60224 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC17.07■□□□□ 0.32
SSX4O60224 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SSX4O60224 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SSX4O60224 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SSX4O60224 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC17.07■□□□□ 0.32
SSX4O60224 AC211429.1-201ENST00000415277 523 ntBASIC17.07■□□□□ 0.32
SSX4O60224 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SSX4O60224 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC17.07■□□□□ 0.32
SSX4O60224 PRKY-204ENST00000533551 1019 ntBASIC17.07■□□□□ 0.32
SSX4O60224 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC17.07■□□□□ 0.32
SSX4O60224 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SSX4O60224 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
SSX4O60224 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC17.07■□□□□ 0.32
SSX4O60224 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC17.07■□□□□ 0.32
SSX4O60224 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
SSX4O60224 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC17.07■□□□□ 0.32
SSX4O60224 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC17.07■□□□□ 0.32
SSX4O60224 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC17.07■□□□□ 0.32
SSX4O60224 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
SSX4O60224 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
SSX4O60224 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SSX4O60224 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
SSX4O60224 AL135905.2-201ENST00000584934 1404 ntBASIC17.06■□□□□ 0.32
SSX4O60224 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC17.06■□□□□ 0.32
SSX4O60224 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
SSX4O60224 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SSX4O60224 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SSX4O60224 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC17.06■□□□□ 0.32
SSX4O60224 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
SSX4O60224 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SSX4O60224 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms