Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SGCEO43556 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SGCEO43556 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SGCEO43556 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
SGCEO43556 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SGCEO43556 AC026271.3-201ENST00000571884 352 ntBASIC16.68■□□□□ 0.26
SGCEO43556 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC16.68■□□□□ 0.26
SGCEO43556 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC16.68■□□□□ 0.26
SGCEO43556 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC16.68■□□□□ 0.26
SGCEO43556 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SGCEO43556 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC16.68■□□□□ 0.26
SGCEO43556 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC16.68■□□□□ 0.26
SGCEO43556 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SGCEO43556 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SGCEO43556 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SGCEO43556 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
SGCEO43556 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SGCEO43556 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC16.68■□□□□ 0.26
SGCEO43556 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SGCEO43556 GAS2L1P1-201ENST00000420145 1480 ntBASIC16.67■□□□□ 0.26
SGCEO43556 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
SGCEO43556 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SGCEO43556 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SGCEO43556 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
SGCEO43556 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC16.67■□□□□ 0.26
SGCEO43556 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
SGCEO43556 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SGCEO43556 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
SGCEO43556 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SGCEO43556 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SGCEO43556 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SGCEO43556 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
SGCEO43556 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SGCEO43556 DERL1-203ENST00000419562 918 ntTSL 2 BASIC16.67■□□□□ 0.26
SGCEO43556 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SGCEO43556 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SGCEO43556 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SGCEO43556 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
SGCEO43556 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SGCEO43556 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SGCEO43556 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SGCEO43556 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SGCEO43556 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
SGCEO43556 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC16.67■□□□□ 0.26
SGCEO43556 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SGCEO43556 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SGCEO43556 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC16.67■□□□□ 0.26
SGCEO43556 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SGCEO43556 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC16.67■□□□□ 0.26
SGCEO43556 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC16.66■□□□□ 0.26
SGCEO43556 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC16.66■□□□□ 0.26
SGCEO43556 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC16.66■□□□□ 0.26
SGCEO43556 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SGCEO43556 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SGCEO43556 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
SGCEO43556 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
SGCEO43556 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SGCEO43556 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SGCEO43556 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SGCEO43556 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SGCEO43556 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SGCEO43556 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC16.66■□□□□ 0.26
SGCEO43556 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SGCEO43556 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
SGCEO43556 AC004951.3-201ENST00000418645 1148 ntBASIC16.66■□□□□ 0.26
SGCEO43556 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC16.66■□□□□ 0.26
SGCEO43556 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC16.66■□□□□ 0.26
SGCEO43556 RCC2P6-201ENST00000526625 1557 ntBASIC16.66■□□□□ 0.26
SGCEO43556 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC16.66■□□□□ 0.26
SGCEO43556 BCL2-203ENST00000589955 5011 ntBASIC16.66■□□□□ 0.26
SGCEO43556 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC16.66■□□□□ 0.26
SGCEO43556 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC16.66■□□□□ 0.26
SGCEO43556 ABBA01031674.1-201ENST00000635145 728 ntBASIC16.66■□□□□ 0.26
SGCEO43556 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SGCEO43556 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SGCEO43556 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SGCEO43556 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC16.66■□□□□ 0.26
SGCEO43556 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SGCEO43556 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SGCEO43556 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SGCEO43556 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SGCEO43556 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC16.65■□□□□ 0.26
SGCEO43556 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SGCEO43556 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC16.65■□□□□ 0.26
SGCEO43556 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC16.65■□□□□ 0.26
SGCEO43556 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC16.65■□□□□ 0.26
SGCEO43556 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
SGCEO43556 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SGCEO43556 USP39-202ENST00000409025 1946 ntTSL 5 BASIC16.65■□□□□ 0.26
SGCEO43556 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SGCEO43556 SAPCD2P4-201ENST00000424595 1171 ntBASIC16.65■□□□□ 0.26
SGCEO43556 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SGCEO43556 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
SGCEO43556 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SGCEO43556 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC16.65■□□□□ 0.26
SGCEO43556 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC16.65■□□□□ 0.26
SGCEO43556 AC005332.8-201ENST00000622750 2735 ntBASIC16.65■□□□□ 0.26
SGCEO43556 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SGCEO43556 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC16.65■□□□□ 0.26
SGCEO43556 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC16.65■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms