Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
SLC28A1O00337 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SLC28A1O00337 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC18.18■□□□□ 0.5
SLC28A1O00337 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC18.18■□□□□ 0.5
SLC28A1O00337 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SLC28A1O00337 HEIH-201ENST00000623091 1652 ntBASIC18.18■□□□□ 0.5
SLC28A1O00337 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SLC28A1O00337 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SLC28A1O00337 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
SLC28A1O00337 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SLC28A1O00337 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SLC28A1O00337 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
SLC28A1O00337 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SLC28A1O00337 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SLC28A1O00337 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
SLC28A1O00337 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
SLC28A1O00337 ESRRAP1-201ENST00000400596 1257 ntBASIC18.17■□□□□ 0.5
SLC28A1O00337 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SLC28A1O00337 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC18.17■□□□□ 0.5
SLC28A1O00337 KRT18P6-201ENST00000555540 1265 ntBASIC18.17■□□□□ 0.5
SLC28A1O00337 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC18.17■□□□□ 0.5
SLC28A1O00337 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC18.17■□□□□ 0.5
SLC28A1O00337 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC18.17■□□□□ 0.5
SLC28A1O00337 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SLC28A1O00337 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SLC28A1O00337 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SLC28A1O00337 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
SLC28A1O00337 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SLC28A1O00337 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SLC28A1O00337 AL390961.4-201ENST00000623958 2535 ntBASIC18.17■□□□□ 0.5
SLC28A1O00337 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
SLC28A1O00337 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
SLC28A1O00337 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SLC28A1O00337 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC18.17■□□□□ 0.5
SLC28A1O00337 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SLC28A1O00337 BICD1-207ENST00000551848 1962 ntBASIC18.17■□□□□ 0.5
SLC28A1O00337 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SLC28A1O00337 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SLC28A1O00337 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SLC28A1O00337 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
SLC28A1O00337 SNAI3-AS1-205ENST00000568633 2096 ntBASIC18.16■□□□□ 0.5
SLC28A1O00337 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SLC28A1O00337 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC18.16■□□□□ 0.5
SLC28A1O00337 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SLC28A1O00337 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SLC28A1O00337 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC18.16■□□□□ 0.5
SLC28A1O00337 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC18.16■□□□□ 0.5
SLC28A1O00337 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC18.16■□□□□ 0.5
SLC28A1O00337 PRSS44-201ENST00000515154 1146 ntBASIC18.16■□□□□ 0.5
SLC28A1O00337 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC18.16■□□□□ 0.5
SLC28A1O00337 RN7SL471P-201ENST00000580476 299 ntBASIC18.16■□□□□ 0.5
SLC28A1O00337 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SLC28A1O00337 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
SLC28A1O00337 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC18.16■□□□□ 0.5
SLC28A1O00337 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
SLC28A1O00337 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SLC28A1O00337 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
SLC28A1O00337 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC18.16■□□□□ 0.5
SLC28A1O00337 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SLC28A1O00337 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SLC28A1O00337 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC18.15■□□□□ 0.5
SLC28A1O00337 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SLC28A1O00337 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC18.15■□□□□ 0.5
SLC28A1O00337 KRT8P11-201ENST00000409686 1436 ntBASIC18.15■□□□□ 0.5
SLC28A1O00337 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC18.15■□□□□ 0.5
SLC28A1O00337 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SLC28A1O00337 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
SLC28A1O00337 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SLC28A1O00337 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SLC28A1O00337 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
SLC28A1O00337 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
SLC28A1O00337 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SLC28A1O00337 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SLC28A1O00337 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
SLC28A1O00337 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC18.15■□□□□ 0.5
SLC28A1O00337 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
SLC28A1O00337 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
SLC28A1O00337 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SLC28A1O00337 TBCB-214ENST00000629269 413 ntTSL 5 BASIC18.15■□□□□ 0.5
SLC28A1O00337 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SLC28A1O00337 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC18.15■□□□□ 0.5
SLC28A1O00337 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SLC28A1O00337 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SLC28A1O00337 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC18.15■□□□□ 0.5
SLC28A1O00337 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SLC28A1O00337 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SLC28A1O00337 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC18.15■□□□□ 0.5
SLC28A1O00337 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC18.15■□□□□ 0.5
SLC28A1O00337 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SLC28A1O00337 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SLC28A1O00337 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SLC28A1O00337 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC18.15■□□□□ 0.5
SLC28A1O00337 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
SLC28A1O00337 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
SLC28A1O00337 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
SLC28A1O00337 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
SLC28A1O00337 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC18.14■□□□□ 0.5
SLC28A1O00337 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC18.14■□□□□ 0.5
SLC28A1O00337 AC073592.3-201ENST00000625118 1834 ntBASIC18.14■□□□□ 0.5
SLC28A1O00337 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms