Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC32.69■■■□□ 2.82
CCDC88BA6NC98 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC32.69■■■□□ 2.82
CCDC88BA6NC98 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC32.69■■■□□ 2.82
CCDC88BA6NC98 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC32.69■■■□□ 2.82
CCDC88BA6NC98 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC32.68■■■□□ 2.82
CCDC88BA6NC98 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC32.68■■■□□ 2.82
CCDC88BA6NC98 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC32.68■■■□□ 2.82
CCDC88BA6NC98 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC32.68■■■□□ 2.82
CCDC88BA6NC98 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC32.68■■■□□ 2.82
CCDC88BA6NC98 RN7SL606P-201ENST00000472779 293 ntBASIC32.68■■■□□ 2.82
CCDC88BA6NC98 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC32.68■■■□□ 2.82
CCDC88BA6NC98 RNA5SP419-201ENST00000515908 135 ntBASIC32.68■■■□□ 2.82
CCDC88BA6NC98 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC32.68■■■□□ 2.82
CCDC88BA6NC98 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC32.68■■■□□ 2.82
CCDC88BA6NC98 AL121912.1-201ENST00000603683 238 ntBASIC32.68■■■□□ 2.82
CCDC88BA6NC98 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC32.68■■■□□ 2.82
CCDC88BA6NC98 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC32.68■■■□□ 2.82
CCDC88BA6NC98 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC32.68■■■□□ 2.82
CCDC88BA6NC98 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC32.68■■■□□ 2.82
CCDC88BA6NC98 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC32.68■■■□□ 2.82
CCDC88BA6NC98 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC32.68■■■□□ 2.82
CCDC88BA6NC98 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC32.68■■■□□ 2.82
CCDC88BA6NC98 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC32.68■■■□□ 2.82
CCDC88BA6NC98 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC32.68■■■□□ 2.82
CCDC88BA6NC98 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC32.67■■■□□ 2.82
CCDC88BA6NC98 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC32.67■■■□□ 2.82
CCDC88BA6NC98 AL353801.3-201ENST00000609898 542 ntBASIC32.67■■■□□ 2.82
CCDC88BA6NC98 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC32.67■■■□□ 2.82
CCDC88BA6NC98 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC32.67■■■□□ 2.82
CCDC88BA6NC98 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC32.67■■■□□ 2.82
CCDC88BA6NC98 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
CCDC88BA6NC98 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC32.67■■■□□ 2.82
CCDC88BA6NC98 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC32.67■■■□□ 2.82
CCDC88BA6NC98 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC32.67■■■□□ 2.82
CCDC88BA6NC98 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC32.67■■■□□ 2.82
CCDC88BA6NC98 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC32.67■■■□□ 2.82
CCDC88BA6NC98 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC32.67■■■□□ 2.82
CCDC88BA6NC98 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC32.67■■■□□ 2.82
CCDC88BA6NC98 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC32.67■■■□□ 2.82
CCDC88BA6NC98 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC32.67■■■□□ 2.82
CCDC88BA6NC98 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC32.67■■■□□ 2.82
CCDC88BA6NC98 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC32.67■■■□□ 2.82
CCDC88BA6NC98 MIR3180-4-201ENST00000582223 153 ntBASIC32.67■■■□□ 2.82
CCDC88BA6NC98 TP73-AS1-207ENST00000624167 988 ntBASIC32.67■■■□□ 2.82
CCDC88BA6NC98 HLA-A-201ENST00000376802 1334 ntBASIC32.66■■■□□ 2.82
CCDC88BA6NC98 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC32.66■■■□□ 2.82
CCDC88BA6NC98 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC32.66■■■□□ 2.82
CCDC88BA6NC98 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC32.66■■■□□ 2.82
CCDC88BA6NC98 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC32.66■■■□□ 2.82
CCDC88BA6NC98 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC32.66■■■□□ 2.82
CCDC88BA6NC98 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC32.66■■■□□ 2.82
CCDC88BA6NC98 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC32.66■■■□□ 2.82
CCDC88BA6NC98 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC32.66■■■□□ 2.82
CCDC88BA6NC98 CDV3-207ENST00000508481 661 ntTSL 3 BASIC32.66■■■□□ 2.82
CCDC88BA6NC98 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC32.66■■■□□ 2.82
CCDC88BA6NC98 AC099336.1-202ENST00000602961 463 ntBASIC32.66■■■□□ 2.82
CCDC88BA6NC98 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC32.66■■■□□ 2.82
CCDC88BA6NC98 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC32.66■■■□□ 2.82
CCDC88BA6NC98 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
CCDC88BA6NC98 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
CCDC88BA6NC98 AC006333.2-201ENST00000607957 2099 ntBASIC32.65■■■□□ 2.82
CCDC88BA6NC98 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC32.65■■■□□ 2.82
CCDC88BA6NC98 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC32.65■■■□□ 2.82
CCDC88BA6NC98 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC32.65■■■□□ 2.82
CCDC88BA6NC98 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC32.65■■■□□ 2.82
CCDC88BA6NC98 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
CCDC88BA6NC98 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
CCDC88BA6NC98 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC32.65■■■□□ 2.82
CCDC88BA6NC98 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
CCDC88BA6NC98 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC32.65■■■□□ 2.82
CCDC88BA6NC98 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC32.64■■■□□ 2.82
CCDC88BA6NC98 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC32.64■■■□□ 2.82
CCDC88BA6NC98 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC32.64■■■□□ 2.82
CCDC88BA6NC98 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC32.64■■■□□ 2.82
CCDC88BA6NC98 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC32.64■■■□□ 2.82
CCDC88BA6NC98 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC32.64■■■□□ 2.82
CCDC88BA6NC98 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC32.64■■■□□ 2.82
CCDC88BA6NC98 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC32.64■■■□□ 2.82
CCDC88BA6NC98 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC32.64■■■□□ 2.82
CCDC88BA6NC98 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC32.64■■■□□ 2.82
CCDC88BA6NC98 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC32.64■■■□□ 2.82
CCDC88BA6NC98 CALM3-211ENST00000598871 561 ntTSL 4 BASIC32.64■■■□□ 2.82
CCDC88BA6NC98 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC32.64■■■□□ 2.82
CCDC88BA6NC98 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC32.64■■■□□ 2.82
CCDC88BA6NC98 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC32.64■■■□□ 2.81
CCDC88BA6NC98 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC32.63■■■□□ 2.81
CCDC88BA6NC98 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC32.63■■■□□ 2.81
CCDC88BA6NC98 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC32.63■■■□□ 2.81
CCDC88BA6NC98 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC32.63■■■□□ 2.81
CCDC88BA6NC98 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC32.63■■■□□ 2.81
CCDC88BA6NC98 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC32.63■■■□□ 2.81
CCDC88BA6NC98 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC32.63■■■□□ 2.81
CCDC88BA6NC98 AC034236.2-201ENST00000606662 1610 ntBASIC32.63■■■□□ 2.81
CCDC88BA6NC98 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC32.63■■■□□ 2.81
CCDC88BA6NC98 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC32.62■■■□□ 2.81
CCDC88BA6NC98 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC32.62■■■□□ 2.81
CCDC88BA6NC98 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC32.62■■■□□ 2.81
CCDC88BA6NC98 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC32.62■■■□□ 2.81
CCDC88BA6NC98 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC32.62■■■□□ 2.81
CCDC88BA6NC98 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC32.62■■■□□ 2.81
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms