Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
PCDHA3Q9Y5H8 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
PCDHA3Q9Y5H8 KRT8P11-201ENST00000409686 1436 ntBASIC19.76■□□□□ 0.75
PCDHA3Q9Y5H8 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC19.76■□□□□ 0.75
PCDHA3Q9Y5H8 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
PCDHA3Q9Y5H8 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PCDHA3Q9Y5H8 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC19.75■□□□□ 0.75
PCDHA3Q9Y5H8 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PCDHA3Q9Y5H8 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
PCDHA3Q9Y5H8 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
PCDHA3Q9Y5H8 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC19.75■□□□□ 0.75
PCDHA3Q9Y5H8 AC126763.1-201ENST00000552015 2118 ntBASIC19.75■□□□□ 0.75
PCDHA3Q9Y5H8 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PCDHA3Q9Y5H8 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
PCDHA3Q9Y5H8 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PCDHA3Q9Y5H8 AC133681.1-201ENST00000465482 601 ntBASIC19.75■□□□□ 0.75
PCDHA3Q9Y5H8 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC19.75■□□□□ 0.75
PCDHA3Q9Y5H8 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC19.75■□□□□ 0.75
PCDHA3Q9Y5H8 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC19.75■□□□□ 0.75
PCDHA3Q9Y5H8 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC19.75■□□□□ 0.75
PCDHA3Q9Y5H8 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC19.75■□□□□ 0.75
PCDHA3Q9Y5H8 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC19.75■□□□□ 0.75
PCDHA3Q9Y5H8 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC19.75■□□□□ 0.75
PCDHA3Q9Y5H8 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
PCDHA3Q9Y5H8 AC068587.9-201ENST00000641814 219 ntBASIC19.75■□□□□ 0.75
PCDHA3Q9Y5H8 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PCDHA3Q9Y5H8 AC005332.8-201ENST00000622750 2735 ntBASIC19.75■□□□□ 0.75
PCDHA3Q9Y5H8 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC19.75■□□□□ 0.75
PCDHA3Q9Y5H8 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC19.75■□□□□ 0.75
PCDHA3Q9Y5H8 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
PCDHA3Q9Y5H8 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
PCDHA3Q9Y5H8 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
PCDHA3Q9Y5H8 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
PCDHA3Q9Y5H8 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
PCDHA3Q9Y5H8 NFYC-AS1-201ENST00000606277 1687 ntBASIC19.75■□□□□ 0.75
PCDHA3Q9Y5H8 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
PCDHA3Q9Y5H8 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PCDHA3Q9Y5H8 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC19.74■□□□□ 0.75
PCDHA3Q9Y5H8 KATNBL1P6-202ENST00000562413 1466 ntBASIC19.74■□□□□ 0.75
PCDHA3Q9Y5H8 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PCDHA3Q9Y5H8 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
PCDHA3Q9Y5H8 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC19.74■□□□□ 0.75
PCDHA3Q9Y5H8 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
PCDHA3Q9Y5H8 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PCDHA3Q9Y5H8 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC19.74■□□□□ 0.75
PCDHA3Q9Y5H8 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
PCDHA3Q9Y5H8 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
PCDHA3Q9Y5H8 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PCDHA3Q9Y5H8 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
PCDHA3Q9Y5H8 ID1-201ENST00000376105 1233 ntBASIC19.74■□□□□ 0.75
PCDHA3Q9Y5H8 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC19.74■□□□□ 0.75
PCDHA3Q9Y5H8 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC19.74■□□□□ 0.75
PCDHA3Q9Y5H8 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC19.74■□□□□ 0.75
PCDHA3Q9Y5H8 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC19.74■□□□□ 0.75
PCDHA3Q9Y5H8 AC124016.1-201ENST00000609552 612 ntBASIC19.74■□□□□ 0.75
PCDHA3Q9Y5H8 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC19.74■□□□□ 0.75
PCDHA3Q9Y5H8 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC19.74■□□□□ 0.75
PCDHA3Q9Y5H8 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC19.74■□□□□ 0.75
PCDHA3Q9Y5H8 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC19.74■□□□□ 0.75
PCDHA3Q9Y5H8 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
PCDHA3Q9Y5H8 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
PCDHA3Q9Y5H8 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC19.74■□□□□ 0.75
PCDHA3Q9Y5H8 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
PCDHA3Q9Y5H8 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
PCDHA3Q9Y5H8 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PCDHA3Q9Y5H8 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC19.74■□□□□ 0.75
PCDHA3Q9Y5H8 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PCDHA3Q9Y5H8 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
PCDHA3Q9Y5H8 NOC2LP1-202ENST00000452600 2235 ntBASIC19.74■□□□□ 0.75
PCDHA3Q9Y5H8 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PCDHA3Q9Y5H8 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PCDHA3Q9Y5H8 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PCDHA3Q9Y5H8 MTMR9LP-203ENST00000426597 1545 ntBASIC19.73■□□□□ 0.75
PCDHA3Q9Y5H8 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC19.73■□□□□ 0.75
PCDHA3Q9Y5H8 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
PCDHA3Q9Y5H8 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC19.73■□□□□ 0.75
PCDHA3Q9Y5H8 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC19.73■□□□□ 0.75
PCDHA3Q9Y5H8 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
PCDHA3Q9Y5H8 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC19.73■□□□□ 0.75
PCDHA3Q9Y5H8 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
PCDHA3Q9Y5H8 AL133373.2-201ENST00000623187 2828 ntBASIC19.73■□□□□ 0.75
PCDHA3Q9Y5H8 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
PCDHA3Q9Y5H8 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PCDHA3Q9Y5H8 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
PCDHA3Q9Y5H8 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PCDHA3Q9Y5H8 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PCDHA3Q9Y5H8 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
PCDHA3Q9Y5H8 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
PCDHA3Q9Y5H8 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
PCDHA3Q9Y5H8 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC19.72■□□□□ 0.75
PCDHA3Q9Y5H8 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
PCDHA3Q9Y5H8 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
PCDHA3Q9Y5H8 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
PCDHA3Q9Y5H8 AC004980.1-204ENST00000429707 299 ntBASIC19.72■□□□□ 0.75
PCDHA3Q9Y5H8 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PCDHA3Q9Y5H8 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
PCDHA3Q9Y5H8 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
PCDHA3Q9Y5H8 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC19.72■□□□□ 0.75
PCDHA3Q9Y5H8 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC19.72■□□□□ 0.75
PCDHA3Q9Y5H8 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC19.72■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms