Protein–RNA interactions for Protein: Q9Y3I0

RTCB, tRNA-splicing ligase RtcB homolog, humanhuman

Known RBP Predictions only

Length 505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTCBQ9Y3I0 BX640515.1-201ENST00000617215 977 ntBASIC23.82■■□□□ 1.4
RTCBQ9Y3I0 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC23.82■■□□□ 1.4
RTCBQ9Y3I0 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
RTCBQ9Y3I0 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
RTCBQ9Y3I0 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
RTCBQ9Y3I0 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
RTCBQ9Y3I0 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
RTCBQ9Y3I0 AC008556.1-201ENST00000610908 2040 ntBASIC23.81■■□□□ 1.4
RTCBQ9Y3I0 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC23.81■■□□□ 1.4
RTCBQ9Y3I0 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC23.81■■□□□ 1.4
RTCBQ9Y3I0 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC23.81■■□□□ 1.4
RTCBQ9Y3I0 RCC2P3-201ENST00000418112 1537 ntBASIC23.81■■□□□ 1.4
RTCBQ9Y3I0 AC099778.1-201ENST00000568593 1911 ntBASIC23.81■■□□□ 1.4
RTCBQ9Y3I0 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
RTCBQ9Y3I0 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
RTCBQ9Y3I0 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
RTCBQ9Y3I0 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
RTCBQ9Y3I0 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC23.81■■□□□ 1.4
RTCBQ9Y3I0 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
RTCBQ9Y3I0 IGHV3-47-201ENST00000425060 335 ntBASIC23.81■■□□□ 1.4
RTCBQ9Y3I0 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC23.81■■□□□ 1.4
RTCBQ9Y3I0 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC23.81■■□□□ 1.4
RTCBQ9Y3I0 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC23.81■■□□□ 1.4
RTCBQ9Y3I0 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC23.81■■□□□ 1.4
RTCBQ9Y3I0 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC23.81■■□□□ 1.4
RTCBQ9Y3I0 AL671883.3-201ENST00000603274 991 ntBASIC23.81■■□□□ 1.4
RTCBQ9Y3I0 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
RTCBQ9Y3I0 GABARAPL3-202ENST00000624044 1851 ntBASIC23.81■■□□□ 1.4
RTCBQ9Y3I0 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC23.81■■□□□ 1.4
RTCBQ9Y3I0 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC23.81■■□□□ 1.4
RTCBQ9Y3I0 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
RTCBQ9Y3I0 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
RTCBQ9Y3I0 AKR1C7P-201ENST00000305623 895 ntBASIC23.8■■□□□ 1.4
RTCBQ9Y3I0 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
RTCBQ9Y3I0 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
RTCBQ9Y3I0 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC23.8■■□□□ 1.4
RTCBQ9Y3I0 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC23.8■■□□□ 1.4
RTCBQ9Y3I0 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
RTCBQ9Y3I0 ABR-204ENST00000543210 1049 ntTSL 2 BASIC23.8■■□□□ 1.4
RTCBQ9Y3I0 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC23.8■■□□□ 1.4
RTCBQ9Y3I0 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
RTCBQ9Y3I0 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
RTCBQ9Y3I0 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
RTCBQ9Y3I0 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
RTCBQ9Y3I0 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
RTCBQ9Y3I0 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC23.79■■□□□ 1.4
RTCBQ9Y3I0 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
RTCBQ9Y3I0 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
RTCBQ9Y3I0 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
RTCBQ9Y3I0 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC23.79■■□□□ 1.4
RTCBQ9Y3I0 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
RTCBQ9Y3I0 AL590627.1-203ENST00000421194 1026 ntBASIC23.79■■□□□ 1.4
RTCBQ9Y3I0 TSPY12P-201ENST00000421279 868 ntBASIC23.79■■□□□ 1.4
RTCBQ9Y3I0 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC23.79■■□□□ 1.4
RTCBQ9Y3I0 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC23.79■■□□□ 1.4
RTCBQ9Y3I0 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC23.79■■□□□ 1.4
RTCBQ9Y3I0 GPR32P1-201ENST00000601788 811 ntBASIC23.79■■□□□ 1.4
RTCBQ9Y3I0 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
RTCBQ9Y3I0 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC23.79■■□□□ 1.4
RTCBQ9Y3I0 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC23.79■■□□□ 1.4
RTCBQ9Y3I0 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
RTCBQ9Y3I0 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC23.79■■□□□ 1.4
RTCBQ9Y3I0 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
RTCBQ9Y3I0 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
RTCBQ9Y3I0 AL512353.2-201ENST00000448759 1962 ntBASIC23.78■■□□□ 1.4
RTCBQ9Y3I0 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
RTCBQ9Y3I0 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
RTCBQ9Y3I0 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
RTCBQ9Y3I0 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC23.78■■□□□ 1.4
RTCBQ9Y3I0 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC23.78■■□□□ 1.4
RTCBQ9Y3I0 FICD-205ENST00000552758 603 ntTSL 2 BASIC23.78■■□□□ 1.4
RTCBQ9Y3I0 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC23.78■■□□□ 1.4
RTCBQ9Y3I0 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC23.78■■□□□ 1.4
RTCBQ9Y3I0 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
RTCBQ9Y3I0 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC23.78■■□□□ 1.4
RTCBQ9Y3I0 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
RTCBQ9Y3I0 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC23.78■■□□□ 1.4
RTCBQ9Y3I0 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC23.78■■□□□ 1.4
RTCBQ9Y3I0 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
RTCBQ9Y3I0 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
RTCBQ9Y3I0 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
RTCBQ9Y3I0 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
RTCBQ9Y3I0 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
RTCBQ9Y3I0 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC23.77■■□□□ 1.4
RTCBQ9Y3I0 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC23.77■■□□□ 1.4
RTCBQ9Y3I0 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
RTCBQ9Y3I0 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
RTCBQ9Y3I0 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC23.77■■□□□ 1.4
RTCBQ9Y3I0 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
RTCBQ9Y3I0 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
RTCBQ9Y3I0 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC23.77■■□□□ 1.4
RTCBQ9Y3I0 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC23.77■■□□□ 1.4
RTCBQ9Y3I0 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
RTCBQ9Y3I0 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC23.77■■□□□ 1.4
RTCBQ9Y3I0 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
RTCBQ9Y3I0 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC23.77■■□□□ 1.4
RTCBQ9Y3I0 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC23.77■■□□□ 1.4
RTCBQ9Y3I0 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC23.77■■□□□ 1.4
RTCBQ9Y3I0 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC23.77■■□□□ 1.4
RTCBQ9Y3I0 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms