Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HIF3AQ9Y2N7 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC17.07■□□□□ 0.32
HIF3AQ9Y2N7 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC17.07■□□□□ 0.32
HIF3AQ9Y2N7 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
HIF3AQ9Y2N7 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HIF3AQ9Y2N7 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HIF3AQ9Y2N7 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HIF3AQ9Y2N7 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HIF3AQ9Y2N7 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HIF3AQ9Y2N7 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC17.06■□□□□ 0.32
HIF3AQ9Y2N7 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HIF3AQ9Y2N7 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC17.06■□□□□ 0.32
HIF3AQ9Y2N7 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HIF3AQ9Y2N7 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
HIF3AQ9Y2N7 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HIF3AQ9Y2N7 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HIF3AQ9Y2N7 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
HIF3AQ9Y2N7 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
HIF3AQ9Y2N7 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HIF3AQ9Y2N7 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
HIF3AQ9Y2N7 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC17.06■□□□□ 0.32
HIF3AQ9Y2N7 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC17.06■□□□□ 0.32
HIF3AQ9Y2N7 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
HIF3AQ9Y2N7 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC17.06■□□□□ 0.32
HIF3AQ9Y2N7 ANO7L1-203ENST00000602586 1720 ntBASIC17.06■□□□□ 0.32
HIF3AQ9Y2N7 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
HIF3AQ9Y2N7 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HIF3AQ9Y2N7 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC17.06■□□□□ 0.32
HIF3AQ9Y2N7 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC17.06■□□□□ 0.32
HIF3AQ9Y2N7 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC17.06■□□□□ 0.32
HIF3AQ9Y2N7 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
HIF3AQ9Y2N7 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
HIF3AQ9Y2N7 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
HIF3AQ9Y2N7 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
HIF3AQ9Y2N7 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HIF3AQ9Y2N7 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HIF3AQ9Y2N7 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC17.06■□□□□ 0.32
HIF3AQ9Y2N7 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
HIF3AQ9Y2N7 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC17.05■□□□□ 0.32
HIF3AQ9Y2N7 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HIF3AQ9Y2N7 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
HIF3AQ9Y2N7 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC17.05■□□□□ 0.32
HIF3AQ9Y2N7 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HIF3AQ9Y2N7 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HIF3AQ9Y2N7 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
HIF3AQ9Y2N7 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HIF3AQ9Y2N7 HTR7P1-201ENST00000538670 1336 ntBASIC17.05■□□□□ 0.32
HIF3AQ9Y2N7 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC17.05■□□□□ 0.32
HIF3AQ9Y2N7 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC17.05■□□□□ 0.32
HIF3AQ9Y2N7 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HIF3AQ9Y2N7 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC17.05■□□□□ 0.32
HIF3AQ9Y2N7 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HIF3AQ9Y2N7 AL353807.1-201ENST00000427475 662 ntBASIC17.05■□□□□ 0.32
HIF3AQ9Y2N7 PPP1R14BP5-201ENST00000440334 435 ntBASIC17.05■□□□□ 0.32
HIF3AQ9Y2N7 KSR1P1-201ENST00000446298 240 ntBASIC17.05■□□□□ 0.32
HIF3AQ9Y2N7 AP002982.1-201ENST00000492365 877 ntBASIC17.05■□□□□ 0.32
HIF3AQ9Y2N7 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC17.05■□□□□ 0.32
HIF3AQ9Y2N7 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC17.05■□□□□ 0.32
HIF3AQ9Y2N7 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
HIF3AQ9Y2N7 PRSS44-201ENST00000515154 1146 ntBASIC17.05■□□□□ 0.32
HIF3AQ9Y2N7 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
HIF3AQ9Y2N7 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC17.05■□□□□ 0.32
HIF3AQ9Y2N7 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HIF3AQ9Y2N7 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HIF3AQ9Y2N7 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HIF3AQ9Y2N7 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HIF3AQ9Y2N7 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
HIF3AQ9Y2N7 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
HIF3AQ9Y2N7 KRT8P11-201ENST00000409686 1436 ntBASIC17.04■□□□□ 0.32
HIF3AQ9Y2N7 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HIF3AQ9Y2N7 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
HIF3AQ9Y2N7 COBL-210ENST00000632460 1941 ntTSL 5 BASIC17.04■□□□□ 0.32
HIF3AQ9Y2N7 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HIF3AQ9Y2N7 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
HIF3AQ9Y2N7 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC17.04■□□□□ 0.32
HIF3AQ9Y2N7 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HIF3AQ9Y2N7 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HIF3AQ9Y2N7 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC17.04■□□□□ 0.32
HIF3AQ9Y2N7 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HIF3AQ9Y2N7 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC17.04■□□□□ 0.32
HIF3AQ9Y2N7 C1QBPP2-201ENST00000528754 825 ntBASIC17.04■□□□□ 0.32
HIF3AQ9Y2N7 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC17.04■□□□□ 0.32
HIF3AQ9Y2N7 MIR4651-201ENST00000582622 73 ntBASIC17.04■□□□□ 0.32
HIF3AQ9Y2N7 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HIF3AQ9Y2N7 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HIF3AQ9Y2N7 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HIF3AQ9Y2N7 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
HIF3AQ9Y2N7 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HIF3AQ9Y2N7 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HIF3AQ9Y2N7 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HIF3AQ9Y2N7 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HIF3AQ9Y2N7 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC17.04■□□□□ 0.32
HIF3AQ9Y2N7 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC17.04■□□□□ 0.32
HIF3AQ9Y2N7 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HIF3AQ9Y2N7 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HIF3AQ9Y2N7 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
HIF3AQ9Y2N7 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC17.04■□□□□ 0.32
HIF3AQ9Y2N7 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
HIF3AQ9Y2N7 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HIF3AQ9Y2N7 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms