Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VPS9D1Q9Y2B5 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VPS9D1Q9Y2B5 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
VPS9D1Q9Y2B5 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS9D1Q9Y2B5 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VPS9D1Q9Y2B5 RPS2P55-201ENST00000397318 883 ntBASIC18.79■□□□□ 0.6
VPS9D1Q9Y2B5 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS9D1Q9Y2B5 FAM197Y1-201ENST00000421178 764 ntBASIC18.79■□□□□ 0.6
VPS9D1Q9Y2B5 AC107956.1-201ENST00000494359 873 ntBASIC18.79■□□□□ 0.6
VPS9D1Q9Y2B5 DGCR10-201ENST00000609839 495 ntBASIC18.79■□□□□ 0.6
VPS9D1Q9Y2B5 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
VPS9D1Q9Y2B5 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VPS9D1Q9Y2B5 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VPS9D1Q9Y2B5 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC18.79■□□□□ 0.6
VPS9D1Q9Y2B5 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC18.79■□□□□ 0.6
VPS9D1Q9Y2B5 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VPS9D1Q9Y2B5 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC18.79■□□□□ 0.6
VPS9D1Q9Y2B5 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS9D1Q9Y2B5 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS9D1Q9Y2B5 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS9D1Q9Y2B5 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS9D1Q9Y2B5 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS9D1Q9Y2B5 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC18.78■□□□□ 0.6
VPS9D1Q9Y2B5 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS9D1Q9Y2B5 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS9D1Q9Y2B5 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS9D1Q9Y2B5 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS9D1Q9Y2B5 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS9D1Q9Y2B5 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VPS9D1Q9Y2B5 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC18.78■□□□□ 0.6
VPS9D1Q9Y2B5 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
VPS9D1Q9Y2B5 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS9D1Q9Y2B5 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC18.78■□□□□ 0.6
VPS9D1Q9Y2B5 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC18.78■□□□□ 0.6
VPS9D1Q9Y2B5 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC18.78■□□□□ 0.6
VPS9D1Q9Y2B5 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC18.78■□□□□ 0.6
VPS9D1Q9Y2B5 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS9D1Q9Y2B5 AL512353.2-201ENST00000448759 1962 ntBASIC18.78■□□□□ 0.6
VPS9D1Q9Y2B5 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS9D1Q9Y2B5 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS9D1Q9Y2B5 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS9D1Q9Y2B5 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS9D1Q9Y2B5 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC18.78■□□□□ 0.6
VPS9D1Q9Y2B5 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
VPS9D1Q9Y2B5 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS9D1Q9Y2B5 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC18.77■□□□□ 0.6
VPS9D1Q9Y2B5 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS9D1Q9Y2B5 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC18.77■□□□□ 0.6
VPS9D1Q9Y2B5 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
VPS9D1Q9Y2B5 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC18.77■□□□□ 0.6
VPS9D1Q9Y2B5 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS9D1Q9Y2B5 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS9D1Q9Y2B5 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS9D1Q9Y2B5 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS9D1Q9Y2B5 BAALC-201ENST00000297574 801 ntTSL 3 BASIC18.77■□□□□ 0.6
VPS9D1Q9Y2B5 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC18.77■□□□□ 0.6
VPS9D1Q9Y2B5 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS9D1Q9Y2B5 AC009446.1-201ENST00000519840 808 ntTSL 2 BASIC18.77■□□□□ 0.6
VPS9D1Q9Y2B5 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC18.77■□□□□ 0.6
VPS9D1Q9Y2B5 AC233702.5-201ENST00000584107 538 ntBASIC18.77■□□□□ 0.6
VPS9D1Q9Y2B5 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC18.77■□□□□ 0.6
VPS9D1Q9Y2B5 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC18.77■□□□□ 0.6
VPS9D1Q9Y2B5 AP000692.2-201ENST00000608391 879 ntBASIC18.77■□□□□ 0.6
VPS9D1Q9Y2B5 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC18.77■□□□□ 0.6
VPS9D1Q9Y2B5 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
VPS9D1Q9Y2B5 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS9D1Q9Y2B5 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC18.77■□□□□ 0.6
VPS9D1Q9Y2B5 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC18.77■□□□□ 0.6
VPS9D1Q9Y2B5 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC18.77■□□□□ 0.6
VPS9D1Q9Y2B5 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
VPS9D1Q9Y2B5 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
VPS9D1Q9Y2B5 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC18.77■□□□□ 0.59
VPS9D1Q9Y2B5 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
VPS9D1Q9Y2B5 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS9D1Q9Y2B5 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS9D1Q9Y2B5 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS9D1Q9Y2B5 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC18.76■□□□□ 0.59
VPS9D1Q9Y2B5 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS9D1Q9Y2B5 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS9D1Q9Y2B5 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC18.76■□□□□ 0.59
VPS9D1Q9Y2B5 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS9D1Q9Y2B5 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
VPS9D1Q9Y2B5 ABHD17AP1-201ENST00000358206 933 ntBASIC18.76■□□□□ 0.59
VPS9D1Q9Y2B5 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS9D1Q9Y2B5 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VPS9D1Q9Y2B5 AC011506.1-201ENST00000474329 610 ntBASIC18.76■□□□□ 0.59
VPS9D1Q9Y2B5 NUDT16P1-203ENST00000513809 620 ntBASIC18.76■□□□□ 0.59
VPS9D1Q9Y2B5 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
VPS9D1Q9Y2B5 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VPS9D1Q9Y2B5 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS9D1Q9Y2B5 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC18.76■□□□□ 0.59
VPS9D1Q9Y2B5 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS9D1Q9Y2B5 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC18.76■□□□□ 0.59
VPS9D1Q9Y2B5 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS9D1Q9Y2B5 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS9D1Q9Y2B5 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VPS9D1Q9Y2B5 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC18.76■□□□□ 0.59
VPS9D1Q9Y2B5 HEIH-201ENST00000623091 1652 ntBASIC18.76■□□□□ 0.59
VPS9D1Q9Y2B5 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VPS9D1Q9Y2B5 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms