Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
VPS28Q9UK41 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS28Q9UK41 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC19.42■□□□□ 0.7
VPS28Q9UK41 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC19.42■□□□□ 0.7
VPS28Q9UK41 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC19.42■□□□□ 0.7
VPS28Q9UK41 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS28Q9UK41 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS28Q9UK41 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS28Q9UK41 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC19.42■□□□□ 0.7
VPS28Q9UK41 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC19.42■□□□□ 0.7
VPS28Q9UK41 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS28Q9UK41 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
VPS28Q9UK41 TERF1P1-201ENST00000311003 1181 ntBASIC19.42■□□□□ 0.7
VPS28Q9UK41 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS28Q9UK41 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS28Q9UK41 HMGA1P5-201ENST00000412453 271 ntBASIC19.42■□□□□ 0.7
VPS28Q9UK41 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VPS28Q9UK41 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
VPS28Q9UK41 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC19.42■□□□□ 0.7
VPS28Q9UK41 ATP5G1P1-201ENST00000448724 379 ntBASIC19.42■□□□□ 0.7
VPS28Q9UK41 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC19.42■□□□□ 0.7
VPS28Q9UK41 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
VPS28Q9UK41 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS28Q9UK41 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC19.42■□□□□ 0.7
VPS28Q9UK41 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC19.42■□□□□ 0.7
VPS28Q9UK41 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC19.42■□□□□ 0.7
VPS28Q9UK41 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
VPS28Q9UK41 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VPS28Q9UK41 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS28Q9UK41 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS28Q9UK41 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS28Q9UK41 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC19.41■□□□□ 0.7
VPS28Q9UK41 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS28Q9UK41 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC19.41■□□□□ 0.7
VPS28Q9UK41 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
VPS28Q9UK41 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS28Q9UK41 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC19.41■□□□□ 0.7
VPS28Q9UK41 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS28Q9UK41 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS28Q9UK41 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS28Q9UK41 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
VPS28Q9UK41 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS28Q9UK41 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
VPS28Q9UK41 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS28Q9UK41 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC19.41■□□□□ 0.7
VPS28Q9UK41 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
VPS28Q9UK41 KRT18P57-201ENST00000443599 1254 ntBASIC19.41■□□□□ 0.7
VPS28Q9UK41 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC19.41■□□□□ 0.7
VPS28Q9UK41 AP003041.3-201ENST00000527151 707 ntBASIC19.41■□□□□ 0.7
VPS28Q9UK41 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
VPS28Q9UK41 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS28Q9UK41 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS28Q9UK41 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC19.41■□□□□ 0.7
VPS28Q9UK41 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC19.41■□□□□ 0.7
VPS28Q9UK41 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS28Q9UK41 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC19.41■□□□□ 0.7
VPS28Q9UK41 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VPS28Q9UK41 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC19.41■□□□□ 0.7
VPS28Q9UK41 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC19.41■□□□□ 0.7
VPS28Q9UK41 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VPS28Q9UK41 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VPS28Q9UK41 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS28Q9UK41 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
VPS28Q9UK41 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS28Q9UK41 AC141586.3-201ENST00000562166 1838 ntBASIC19.4■□□□□ 0.7
VPS28Q9UK41 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VPS28Q9UK41 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS28Q9UK41 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
VPS28Q9UK41 TMPOP1-202ENST00000424642 1267 ntBASIC19.4■□□□□ 0.7
VPS28Q9UK41 AC010203.1-204ENST00000548782 407 ntBASIC19.4■□□□□ 0.7
VPS28Q9UK41 RN7SL850P-201ENST00000579959 291 ntBASIC19.4■□□□□ 0.7
VPS28Q9UK41 GPX4-207ENST00000589115 812 ntTSL 2 BASIC19.4■□□□□ 0.7
VPS28Q9UK41 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS28Q9UK41 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC19.4■□□□□ 0.7
VPS28Q9UK41 AC092865.7-201ENST00000641832 219 ntBASIC19.4■□□□□ 0.7
VPS28Q9UK41 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS28Q9UK41 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS28Q9UK41 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS28Q9UK41 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VPS28Q9UK41 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VPS28Q9UK41 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS28Q9UK41 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS28Q9UK41 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS28Q9UK41 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
VPS28Q9UK41 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC19.39■□□□□ 0.69
VPS28Q9UK41 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS28Q9UK41 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS28Q9UK41 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
VPS28Q9UK41 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
VPS28Q9UK41 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
VPS28Q9UK41 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC19.39■□□□□ 0.69
VPS28Q9UK41 BUB3-202ENST00000368859 667 ntTSL 3 BASIC19.39■□□□□ 0.69
VPS28Q9UK41 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
VPS28Q9UK41 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC19.39■□□□□ 0.69
VPS28Q9UK41 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC19.39■□□□□ 0.69
VPS28Q9UK41 GXYLT1P6-201ENST00000456472 1187 ntBASIC19.39■□□□□ 0.69
VPS28Q9UK41 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VPS28Q9UK41 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
VPS28Q9UK41 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC19.39■□□□□ 0.69
VPS28Q9UK41 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms