Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
CCDC65Q8IXS2 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC65Q8IXS2 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC65Q8IXS2 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC65Q8IXS2 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC65Q8IXS2 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC65Q8IXS2 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC20.97■□□□□ 0.95
CCDC65Q8IXS2 TSPY7P-201ENST00000431358 1114 ntBASIC20.97■□□□□ 0.95
CCDC65Q8IXS2 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC65Q8IXS2 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC20.97■□□□□ 0.95
CCDC65Q8IXS2 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC20.97■□□□□ 0.95
CCDC65Q8IXS2 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC20.97■□□□□ 0.95
CCDC65Q8IXS2 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC20.97■□□□□ 0.95
CCDC65Q8IXS2 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC20.97■□□□□ 0.95
CCDC65Q8IXS2 MIR4785-201ENST00000585005 73 ntBASIC20.97■□□□□ 0.95
CCDC65Q8IXS2 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC65Q8IXS2 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC65Q8IXS2 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC65Q8IXS2 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC65Q8IXS2 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC65Q8IXS2 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC20.96■□□□□ 0.95
CCDC65Q8IXS2 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC65Q8IXS2 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC20.96■□□□□ 0.95
CCDC65Q8IXS2 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
CCDC65Q8IXS2 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
CCDC65Q8IXS2 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
CCDC65Q8IXS2 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC65Q8IXS2 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC65Q8IXS2 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC65Q8IXS2 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
CCDC65Q8IXS2 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC65Q8IXS2 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC20.96■□□□□ 0.95
CCDC65Q8IXS2 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC65Q8IXS2 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC20.96■□□□□ 0.95
CCDC65Q8IXS2 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
CCDC65Q8IXS2 MFAP1P1-201ENST00000442257 1255 ntBASIC20.96■□□□□ 0.95
CCDC65Q8IXS2 DHDH-203ENST00000522614 776 ntTSL 5 BASIC20.96■□□□□ 0.95
CCDC65Q8IXS2 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC20.96■□□□□ 0.95
CCDC65Q8IXS2 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC20.96■□□□□ 0.95
CCDC65Q8IXS2 GRAMD4P8-201ENST00000605465 1115 ntBASIC20.96■□□□□ 0.95
CCDC65Q8IXS2 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
CCDC65Q8IXS2 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC65Q8IXS2 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC65Q8IXS2 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC65Q8IXS2 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC65Q8IXS2 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
CCDC65Q8IXS2 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC65Q8IXS2 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC65Q8IXS2 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC20.96■□□□□ 0.95
CCDC65Q8IXS2 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC20.96■□□□□ 0.95
CCDC65Q8IXS2 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC65Q8IXS2 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC20.96■□□□□ 0.95
CCDC65Q8IXS2 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC65Q8IXS2 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
CCDC65Q8IXS2 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC20.95■□□□□ 0.95
CCDC65Q8IXS2 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC65Q8IXS2 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC65Q8IXS2 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC65Q8IXS2 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC65Q8IXS2 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC65Q8IXS2 AL031598.1-201ENST00000561511 1773 ntBASIC20.95■□□□□ 0.94
CCDC65Q8IXS2 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC65Q8IXS2 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC20.95■□□□□ 0.94
CCDC65Q8IXS2 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC20.95■□□□□ 0.94
CCDC65Q8IXS2 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC20.95■□□□□ 0.94
CCDC65Q8IXS2 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC20.95■□□□□ 0.94
CCDC65Q8IXS2 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC20.95■□□□□ 0.94
CCDC65Q8IXS2 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC20.95■□□□□ 0.94
CCDC65Q8IXS2 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC65Q8IXS2 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC20.95■□□□□ 0.94
CCDC65Q8IXS2 AL512353.2-201ENST00000448759 1962 ntBASIC20.95■□□□□ 0.94
CCDC65Q8IXS2 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC65Q8IXS2 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC65Q8IXS2 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC20.95■□□□□ 0.94
CCDC65Q8IXS2 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
CCDC65Q8IXS2 Z98044.1-201ENST00000632503 1764 ntBASIC20.95■□□□□ 0.94
CCDC65Q8IXS2 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC20.94■□□□□ 0.94
CCDC65Q8IXS2 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
CCDC65Q8IXS2 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC20.94■□□□□ 0.94
CCDC65Q8IXS2 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC65Q8IXS2 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
CCDC65Q8IXS2 AL020996.1-203ENST00000536896 2307 ntBASIC20.94■□□□□ 0.94
CCDC65Q8IXS2 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC65Q8IXS2 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC20.94■□□□□ 0.94
CCDC65Q8IXS2 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC20.94■□□□□ 0.94
CCDC65Q8IXS2 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC20.94■□□□□ 0.94
CCDC65Q8IXS2 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC65Q8IXS2 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC65Q8IXS2 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC65Q8IXS2 SNORA78-201ENST00000459373 127 ntBASIC20.94■□□□□ 0.94
CCDC65Q8IXS2 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC20.94■□□□□ 0.94
CCDC65Q8IXS2 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC65Q8IXS2 CYGB-204ENST00000589342 815 ntTSL 3 BASIC20.94■□□□□ 0.94
CCDC65Q8IXS2 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC20.94■□□□□ 0.94
CCDC65Q8IXS2 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC65Q8IXS2 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC20.94■□□□□ 0.94
CCDC65Q8IXS2 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
CCDC65Q8IXS2 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC65Q8IXS2 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CCDC65Q8IXS2 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms