Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC60Q8IWA6 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
CCDC60Q8IWA6 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC60Q8IWA6 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC21.01■□□□□ 0.95
CCDC60Q8IWA6 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC60Q8IWA6 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC60Q8IWA6 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC60Q8IWA6 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC60Q8IWA6 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CCDC60Q8IWA6 AC005332.7-201ENST00000614046 2005 ntBASIC21■□□□□ 0.95
CCDC60Q8IWA6 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC60Q8IWA6 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC60Q8IWA6 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC21■□□□□ 0.95
CCDC60Q8IWA6 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC60Q8IWA6 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC21■□□□□ 0.95
CCDC60Q8IWA6 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC60Q8IWA6 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC60Q8IWA6 AL109659.2-201ENST00000606809 1674 ntBASIC21■□□□□ 0.95
CCDC60Q8IWA6 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC21■□□□□ 0.95
CCDC60Q8IWA6 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC60Q8IWA6 SPDYE15P-201ENST00000424157 909 ntBASIC21■□□□□ 0.95
CCDC60Q8IWA6 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC21■□□□□ 0.95
CCDC60Q8IWA6 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC21■□□□□ 0.95
CCDC60Q8IWA6 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC21■□□□□ 0.95
CCDC60Q8IWA6 CD81-212ENST00000526072 1172 ntTSL 5 BASIC21■□□□□ 0.95
CCDC60Q8IWA6 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC21■□□□□ 0.95
CCDC60Q8IWA6 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC21■□□□□ 0.95
CCDC60Q8IWA6 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC21■□□□□ 0.95
CCDC60Q8IWA6 CLN6-204ENST00000564752 900 ntTSL 3 BASIC21■□□□□ 0.95
CCDC60Q8IWA6 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC21■□□□□ 0.95
CCDC60Q8IWA6 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC21■□□□□ 0.95
CCDC60Q8IWA6 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC21■□□□□ 0.95
CCDC60Q8IWA6 AC116562.4-201ENST00000641316 2276 ntBASIC21■□□□□ 0.95
CCDC60Q8IWA6 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC60Q8IWA6 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
CCDC60Q8IWA6 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC60Q8IWA6 KRT8P32-201ENST00000512863 1461 ntBASIC21■□□□□ 0.95
CCDC60Q8IWA6 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC21■□□□□ 0.95
CCDC60Q8IWA6 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC20.99■□□□□ 0.95
CCDC60Q8IWA6 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC60Q8IWA6 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC60Q8IWA6 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC20.99■□□□□ 0.95
CCDC60Q8IWA6 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC60Q8IWA6 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC20.99■□□□□ 0.95
CCDC60Q8IWA6 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC20.99■□□□□ 0.95
CCDC60Q8IWA6 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC60Q8IWA6 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC60Q8IWA6 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC20.99■□□□□ 0.95
CCDC60Q8IWA6 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC20.99■□□□□ 0.95
CCDC60Q8IWA6 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
CCDC60Q8IWA6 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC20.99■□□□□ 0.95
CCDC60Q8IWA6 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC20.99■□□□□ 0.95
CCDC60Q8IWA6 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC20.99■□□□□ 0.95
CCDC60Q8IWA6 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC60Q8IWA6 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC20.99■□□□□ 0.95
CCDC60Q8IWA6 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC60Q8IWA6 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC60Q8IWA6 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC20.99■□□□□ 0.95
CCDC60Q8IWA6 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC60Q8IWA6 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC20.99■□□□□ 0.95
CCDC60Q8IWA6 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC60Q8IWA6 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC60Q8IWA6 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC60Q8IWA6 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC60Q8IWA6 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC60Q8IWA6 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC60Q8IWA6 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC20.98■□□□□ 0.95
CCDC60Q8IWA6 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC60Q8IWA6 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC60Q8IWA6 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC20.98■□□□□ 0.95
CCDC60Q8IWA6 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC20.98■□□□□ 0.95
CCDC60Q8IWA6 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC20.98■□□□□ 0.95
CCDC60Q8IWA6 DFFB-212ENST00000625756 649 ntTSL 5 BASIC20.98■□□□□ 0.95
CCDC60Q8IWA6 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
CCDC60Q8IWA6 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC60Q8IWA6 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
CCDC60Q8IWA6 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC60Q8IWA6 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC60Q8IWA6 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC60Q8IWA6 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC60Q8IWA6 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC60Q8IWA6 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC20.97■□□□□ 0.95
CCDC60Q8IWA6 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC60Q8IWA6 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC60Q8IWA6 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC20.97■□□□□ 0.95
CCDC60Q8IWA6 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC20.97■□□□□ 0.95
CCDC60Q8IWA6 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC20.97■□□□□ 0.95
CCDC60Q8IWA6 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC20.97■□□□□ 0.95
CCDC60Q8IWA6 STARP1-201ENST00000397973 869 ntBASIC20.97■□□□□ 0.95
CCDC60Q8IWA6 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC60Q8IWA6 AL671277.2-201ENST00000458060 996 ntBASIC20.97■□□□□ 0.95
CCDC60Q8IWA6 AC024243.1-201ENST00000609234 778 ntBASIC20.97■□□□□ 0.95
CCDC60Q8IWA6 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC20.97■□□□□ 0.95
CCDC60Q8IWA6 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC20.97■□□□□ 0.95
CCDC60Q8IWA6 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC60Q8IWA6 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC60Q8IWA6 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC60Q8IWA6 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC60Q8IWA6 AL161938.1-201ENST00000569833 2180 ntBASIC20.97■□□□□ 0.95
CCDC60Q8IWA6 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC20.97■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 59.5 ms