Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
LINC00643Q86TS7 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC11.83□□□□□ -0.52
LINC00643Q86TS7 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
LINC00643Q86TS7 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC11.83□□□□□ -0.52
LINC00643Q86TS7 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC11.83□□□□□ -0.52
LINC00643Q86TS7 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
LINC00643Q86TS7 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
LINC00643Q86TS7 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
LINC00643Q86TS7 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC11.83□□□□□ -0.52
LINC00643Q86TS7 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
LINC00643Q86TS7 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
LINC00643Q86TS7 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
LINC00643Q86TS7 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
LINC00643Q86TS7 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC11.82□□□□□ -0.52
LINC00643Q86TS7 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC11.82□□□□□ -0.52
LINC00643Q86TS7 AC009102.2-201ENST00000606772 1639 ntBASIC11.82□□□□□ -0.52
LINC00643Q86TS7 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
LINC00643Q86TS7 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
LINC00643Q86TS7 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC11.82□□□□□ -0.52
LINC00643Q86TS7 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
LINC00643Q86TS7 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
LINC00643Q86TS7 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC11.82□□□□□ -0.52
LINC00643Q86TS7 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
LINC00643Q86TS7 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC11.82□□□□□ -0.52
LINC00643Q86TS7 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC11.82□□□□□ -0.52
LINC00643Q86TS7 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
LINC00643Q86TS7 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
LINC00643Q86TS7 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC11.82□□□□□ -0.52
LINC00643Q86TS7 BID-213ENST00000615414 2236 ntTSL 5 BASIC11.82□□□□□ -0.52
LINC00643Q86TS7 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
LINC00643Q86TS7 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC11.82□□□□□ -0.52
LINC00643Q86TS7 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC11.82□□□□□ -0.52
LINC00643Q86TS7 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
LINC00643Q86TS7 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
LINC00643Q86TS7 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
LINC00643Q86TS7 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
LINC00643Q86TS7 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC11.82□□□□□ -0.52
LINC00643Q86TS7 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC11.82□□□□□ -0.52
LINC00643Q86TS7 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC11.82□□□□□ -0.52
LINC00643Q86TS7 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
LINC00643Q86TS7 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC11.82□□□□□ -0.52
LINC00643Q86TS7 STK24-203ENST00000397517 4578 ntTSL 2 BASIC11.82□□□□□ -0.52
LINC00643Q86TS7 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC11.82□□□□□ -0.52
LINC00643Q86TS7 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
LINC00643Q86TS7 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
LINC00643Q86TS7 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC11.82□□□□□ -0.52
LINC00643Q86TS7 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
LINC00643Q86TS7 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
LINC00643Q86TS7 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC11.82□□□□□ -0.52
LINC00643Q86TS7 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
LINC00643Q86TS7 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
LINC00643Q86TS7 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC11.82□□□□□ -0.52
LINC00643Q86TS7 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
LINC00643Q86TS7 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC11.82□□□□□ -0.52
LINC00643Q86TS7 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
LINC00643Q86TS7 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC11.82□□□□□ -0.52
LINC00643Q86TS7 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC11.82□□□□□ -0.52
LINC00643Q86TS7 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC11.82□□□□□ -0.52
LINC00643Q86TS7 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC11.82□□□□□ -0.52
LINC00643Q86TS7 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
LINC00643Q86TS7 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
LINC00643Q86TS7 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC11.81□□□□□ -0.52
LINC00643Q86TS7 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
LINC00643Q86TS7 HYMAI-201ENST00000635591 3347 ntBASIC11.81□□□□□ -0.52
LINC00643Q86TS7 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC11.81□□□□□ -0.52
LINC00643Q86TS7 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
LINC00643Q86TS7 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
LINC00643Q86TS7 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
LINC00643Q86TS7 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
LINC00643Q86TS7 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
LINC00643Q86TS7 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC11.81□□□□□ -0.52
LINC00643Q86TS7 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC11.81□□□□□ -0.52
LINC00643Q86TS7 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
LINC00643Q86TS7 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
LINC00643Q86TS7 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC11.81□□□□□ -0.52
LINC00643Q86TS7 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
LINC00643Q86TS7 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
LINC00643Q86TS7 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC11.81□□□□□ -0.52
LINC00643Q86TS7 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC11.81□□□□□ -0.52
LINC00643Q86TS7 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC11.81□□□□□ -0.52
LINC00643Q86TS7 MIR2861-201ENST00000636310 90 ntBASIC11.81□□□□□ -0.52
LINC00643Q86TS7 AC068587.7-201ENST00000641602 218 ntBASIC11.81□□□□□ -0.52
LINC00643Q86TS7 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
LINC00643Q86TS7 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
LINC00643Q86TS7 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
LINC00643Q86TS7 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
LINC00643Q86TS7 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
LINC00643Q86TS7 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC11.81□□□□□ -0.52
LINC00643Q86TS7 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC11.81□□□□□ -0.52
LINC00643Q86TS7 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC11.81□□□□□ -0.52
LINC00643Q86TS7 AL023806.1-201ENST00000603994 1649 ntBASIC11.81□□□□□ -0.52
LINC00643Q86TS7 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC11.81□□□□□ -0.52
LINC00643Q86TS7 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
LINC00643Q86TS7 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
LINC00643Q86TS7 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
LINC00643Q86TS7 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC11.81□□□□□ -0.52
LINC00643Q86TS7 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
LINC00643Q86TS7 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
LINC00643Q86TS7 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
LINC00643Q86TS7 AP006587.3-201ENST00000525742 1516 ntBASIC11.81□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms