Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
CSPG4Q6UVK1 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
CSPG4Q6UVK1 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
CSPG4Q6UVK1 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CSPG4Q6UVK1 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC15.56■□□□□ 0.08
CSPG4Q6UVK1 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CSPG4Q6UVK1 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CSPG4Q6UVK1 PNN-202ENST00000553331 656 ntTSL 3 BASIC15.56■□□□□ 0.08
CSPG4Q6UVK1 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CSPG4Q6UVK1 AL157888.1-201ENST00000631930 593 ntBASIC15.56■□□□□ 0.08
CSPG4Q6UVK1 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CSPG4Q6UVK1 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC15.56■□□□□ 0.08
CSPG4Q6UVK1 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CSPG4Q6UVK1 LINC01006-201ENST00000333319 2292 ntBASIC15.56■□□□□ 0.08
CSPG4Q6UVK1 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CSPG4Q6UVK1 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC15.56■□□□□ 0.08
CSPG4Q6UVK1 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC15.56■□□□□ 0.08
CSPG4Q6UVK1 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CSPG4Q6UVK1 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CSPG4Q6UVK1 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CSPG4Q6UVK1 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC15.56■□□□□ 0.08
CSPG4Q6UVK1 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
CSPG4Q6UVK1 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
CSPG4Q6UVK1 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC15.56■□□□□ 0.08
CSPG4Q6UVK1 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC15.56■□□□□ 0.08
CSPG4Q6UVK1 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC15.56■□□□□ 0.08
CSPG4Q6UVK1 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC15.55■□□□□ 0.08
CSPG4Q6UVK1 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CSPG4Q6UVK1 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC15.55■□□□□ 0.08
CSPG4Q6UVK1 AC020763.4-201ENST00000623414 4170 ntBASIC15.55■□□□□ 0.08
CSPG4Q6UVK1 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CSPG4Q6UVK1 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
CSPG4Q6UVK1 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CSPG4Q6UVK1 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
CSPG4Q6UVK1 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CSPG4Q6UVK1 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CSPG4Q6UVK1 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC15.55■□□□□ 0.08
CSPG4Q6UVK1 LINC00265-3P-201ENST00000447588 903 ntBASIC15.55■□□□□ 0.08
CSPG4Q6UVK1 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC15.55■□□□□ 0.08
CSPG4Q6UVK1 AC079776.4-201ENST00000511039 504 ntBASIC15.55■□□□□ 0.08
CSPG4Q6UVK1 TPM1-218ENST00000559281 851 ntTSL 5 BASIC15.55■□□□□ 0.08
CSPG4Q6UVK1 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC15.55■□□□□ 0.08
CSPG4Q6UVK1 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CSPG4Q6UVK1 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC15.55■□□□□ 0.08
CSPG4Q6UVK1 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC15.55■□□□□ 0.08
CSPG4Q6UVK1 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
CSPG4Q6UVK1 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC15.55■□□□□ 0.08
CSPG4Q6UVK1 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
CSPG4Q6UVK1 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
CSPG4Q6UVK1 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CSPG4Q6UVK1 AL391807.1-203ENST00000604392 2365 ntBASIC15.55■□□□□ 0.08
CSPG4Q6UVK1 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CSPG4Q6UVK1 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CSPG4Q6UVK1 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC15.55■□□□□ 0.08
CSPG4Q6UVK1 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
CSPG4Q6UVK1 COX10-202ENST00000429152 875 ntTSL 2 BASIC15.55■□□□□ 0.08
CSPG4Q6UVK1 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC15.55■□□□□ 0.08
CSPG4Q6UVK1 AL773604.1-201ENST00000617417 272 ntBASIC15.55■□□□□ 0.08
CSPG4Q6UVK1 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC15.55■□□□□ 0.08
CSPG4Q6UVK1 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CSPG4Q6UVK1 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC15.55■□□□□ 0.08
CSPG4Q6UVK1 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
CSPG4Q6UVK1 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CSPG4Q6UVK1 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC15.54■□□□□ 0.08
CSPG4Q6UVK1 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CSPG4Q6UVK1 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
CSPG4Q6UVK1 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CSPG4Q6UVK1 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
CSPG4Q6UVK1 ANKRD18DP-204ENST00000455355 1975 ntBASIC15.54■□□□□ 0.08
CSPG4Q6UVK1 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CSPG4Q6UVK1 GAD2-202ENST00000376248 680 ntTSL 5 BASIC15.54■□□□□ 0.08
CSPG4Q6UVK1 AL031284.1-201ENST00000419297 478 ntBASIC15.54■□□□□ 0.08
CSPG4Q6UVK1 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC15.54■□□□□ 0.08
CSPG4Q6UVK1 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
CSPG4Q6UVK1 AL353801.3-201ENST00000609898 542 ntBASIC15.54■□□□□ 0.08
CSPG4Q6UVK1 AL121772.3-201ENST00000610840 674 ntBASIC15.54■□□□□ 0.08
CSPG4Q6UVK1 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC15.54■□□□□ 0.08
CSPG4Q6UVK1 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CSPG4Q6UVK1 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CSPG4Q6UVK1 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CSPG4Q6UVK1 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CSPG4Q6UVK1 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CSPG4Q6UVK1 KRT18P67-201ENST00000432816 1264 ntBASIC15.54■□□□□ 0.08
CSPG4Q6UVK1 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC15.54■□□□□ 0.08
CSPG4Q6UVK1 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC15.54■□□□□ 0.08
CSPG4Q6UVK1 AL136038.4-201ENST00000603606 1261 ntBASIC15.54■□□□□ 0.08
CSPG4Q6UVK1 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
CSPG4Q6UVK1 REXO1L6P-202ENST00000619970 1078 ntBASIC15.54■□□□□ 0.08
CSPG4Q6UVK1 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
CSPG4Q6UVK1 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC15.53■□□□□ 0.08
CSPG4Q6UVK1 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC15.53■□□□□ 0.08
CSPG4Q6UVK1 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
CSPG4Q6UVK1 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
CSPG4Q6UVK1 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CSPG4Q6UVK1 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CSPG4Q6UVK1 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CSPG4Q6UVK1 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC15.53■□□□□ 0.08
CSPG4Q6UVK1 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC15.53■□□□□ 0.08
CSPG4Q6UVK1 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC15.53■□□□□ 0.08
CSPG4Q6UVK1 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 11.2 ms