Protein–RNA interactions for Protein: Q01581

HMGCS1, Hydroxymethylglutaryl-CoA synthase, cytoplasmic, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1Q01581 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
HMGCS1Q01581 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
HMGCS1Q01581 AC090164.3-201ENST00000610780 2143 ntBASIC18.22■□□□□ 0.51
HMGCS1Q01581 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
HMGCS1Q01581 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC18.22■□□□□ 0.51
HMGCS1Q01581 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HMGCS1Q01581 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
HMGCS1Q01581 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
HMGCS1Q01581 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
HMGCS1Q01581 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC18.21■□□□□ 0.51
HMGCS1Q01581 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC18.21■□□□□ 0.51
HMGCS1Q01581 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC18.21■□□□□ 0.51
HMGCS1Q01581 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
HMGCS1Q01581 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
HMGCS1Q01581 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC18.21■□□□□ 0.51
HMGCS1Q01581 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HMGCS1Q01581 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
HMGCS1Q01581 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HMGCS1Q01581 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
HMGCS1Q01581 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
HMGCS1Q01581 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
HMGCS1Q01581 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
HMGCS1Q01581 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC18.21■□□□□ 0.51
HMGCS1Q01581 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC18.21■□□□□ 0.51
HMGCS1Q01581 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC18.21■□□□□ 0.51
HMGCS1Q01581 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC18.21■□□□□ 0.51
HMGCS1Q01581 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC18.21■□□□□ 0.51
HMGCS1Q01581 AL445675.2-201ENST00000620291 557 ntBASIC18.21■□□□□ 0.51
HMGCS1Q01581 ITM2C-210ENST00000620962 501 ntBASIC18.21■□□□□ 0.51
HMGCS1Q01581 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
HMGCS1Q01581 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC18.21■□□□□ 0.51
HMGCS1Q01581 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HMGCS1Q01581 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
HMGCS1Q01581 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HMGCS1Q01581 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
HMGCS1Q01581 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HMGCS1Q01581 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
HMGCS1Q01581 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HMGCS1Q01581 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC18.2■□□□□ 0.5
HMGCS1Q01581 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HMGCS1Q01581 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC18.2■□□□□ 0.5
HMGCS1Q01581 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
HMGCS1Q01581 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
HMGCS1Q01581 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HMGCS1Q01581 COBL-210ENST00000632460 1941 ntTSL 5 BASIC18.2■□□□□ 0.5
HMGCS1Q01581 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.2■□□□□ 0.5
HMGCS1Q01581 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
HMGCS1Q01581 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC18.2■□□□□ 0.5
HMGCS1Q01581 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HMGCS1Q01581 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HMGCS1Q01581 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
HMGCS1Q01581 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC18.2■□□□□ 0.5
HMGCS1Q01581 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC18.2■□□□□ 0.5
HMGCS1Q01581 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
HMGCS1Q01581 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
HMGCS1Q01581 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC18.2■□□□□ 0.5
HMGCS1Q01581 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
HMGCS1Q01581 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HMGCS1Q01581 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HMGCS1Q01581 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HMGCS1Q01581 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HMGCS1Q01581 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
HMGCS1Q01581 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HMGCS1Q01581 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC18.2■□□□□ 0.5
HMGCS1Q01581 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC18.2■□□□□ 0.5
HMGCS1Q01581 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HMGCS1Q01581 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
HMGCS1Q01581 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
HMGCS1Q01581 HTR7P1-201ENST00000538670 1336 ntBASIC18.2■□□□□ 0.5
HMGCS1Q01581 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC18.2■□□□□ 0.5
HMGCS1Q01581 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
HMGCS1Q01581 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HMGCS1Q01581 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
HMGCS1Q01581 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
HMGCS1Q01581 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HMGCS1Q01581 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HMGCS1Q01581 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HMGCS1Q01581 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HMGCS1Q01581 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HMGCS1Q01581 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
HMGCS1Q01581 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC18.19■□□□□ 0.5
HMGCS1Q01581 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
HMGCS1Q01581 KRT18P29-201ENST00000397031 1267 ntBASIC18.19■□□□□ 0.5
HMGCS1Q01581 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC18.19■□□□□ 0.5
HMGCS1Q01581 KRT8P11-201ENST00000409686 1436 ntBASIC18.19■□□□□ 0.5
HMGCS1Q01581 NIFKP9-201ENST00000419265 221 ntBASIC18.19■□□□□ 0.5
HMGCS1Q01581 AC004980.1-204ENST00000429707 299 ntBASIC18.19■□□□□ 0.5
HMGCS1Q01581 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HMGCS1Q01581 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
HMGCS1Q01581 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC18.19■□□□□ 0.5
HMGCS1Q01581 C1QBPP2-201ENST00000528754 825 ntBASIC18.19■□□□□ 0.5
HMGCS1Q01581 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC18.19■□□□□ 0.5
HMGCS1Q01581 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HMGCS1Q01581 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC18.19■□□□□ 0.5
HMGCS1Q01581 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HMGCS1Q01581 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC18.19■□□□□ 0.5
HMGCS1Q01581 CABP2-204ENST00000636477 941 ntTSL 5 BASIC18.19■□□□□ 0.5
HMGCS1Q01581 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HMGCS1Q01581 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HMGCS1Q01581 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms