Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
PKNOX1P55347 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC18.54■□□□□ 0.56
PKNOX1P55347 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
PKNOX1P55347 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
PKNOX1P55347 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC18.54■□□□□ 0.56
PKNOX1P55347 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC18.54■□□□□ 0.56
PKNOX1P55347 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
PKNOX1P55347 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
PKNOX1P55347 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PKNOX1P55347 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
PKNOX1P55347 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC18.53■□□□□ 0.56
PKNOX1P55347 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
PKNOX1P55347 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PKNOX1P55347 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC18.53■□□□□ 0.56
PKNOX1P55347 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
PKNOX1P55347 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC18.53■□□□□ 0.56
PKNOX1P55347 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PKNOX1P55347 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
PKNOX1P55347 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PKNOX1P55347 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
PKNOX1P55347 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
PKNOX1P55347 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC18.53■□□□□ 0.56
PKNOX1P55347 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC18.53■□□□□ 0.56
PKNOX1P55347 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
PKNOX1P55347 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC18.53■□□□□ 0.56
PKNOX1P55347 F2R-202ENST00000505600 442 ntTSL 2 BASIC18.53■□□□□ 0.56
PKNOX1P55347 AL160286.2-201ENST00000567150 934 ntBASIC18.53■□□□□ 0.56
PKNOX1P55347 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC18.53■□□□□ 0.56
PKNOX1P55347 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
PKNOX1P55347 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
PKNOX1P55347 AL512353.2-201ENST00000448759 1962 ntBASIC18.53■□□□□ 0.56
PKNOX1P55347 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC18.53■□□□□ 0.56
PKNOX1P55347 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
PKNOX1P55347 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
PKNOX1P55347 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC18.53■□□□□ 0.56
PKNOX1P55347 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PKNOX1P55347 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
PKNOX1P55347 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC18.52■□□□□ 0.56
PKNOX1P55347 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PKNOX1P55347 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
PKNOX1P55347 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PKNOX1P55347 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC18.52■□□□□ 0.56
PKNOX1P55347 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PKNOX1P55347 HCG11-201ENST00000411553 5696 ntBASIC18.52■□□□□ 0.56
PKNOX1P55347 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
PKNOX1P55347 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
PKNOX1P55347 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
PKNOX1P55347 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
PKNOX1P55347 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC18.52■□□□□ 0.56
PKNOX1P55347 AC090192.1-201ENST00000517740 490 ntBASIC18.52■□□□□ 0.56
PKNOX1P55347 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC18.52■□□□□ 0.56
PKNOX1P55347 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
PKNOX1P55347 AC008403.3-201ENST00000598924 454 ntBASIC18.52■□□□□ 0.56
PKNOX1P55347 HLA-A-209ENST00000638375 975 ntBASIC18.52■□□□□ 0.56
PKNOX1P55347 AC083906.6-201ENST00000641366 219 ntBASIC18.52■□□□□ 0.56
PKNOX1P55347 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PKNOX1P55347 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
PKNOX1P55347 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
PKNOX1P55347 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
PKNOX1P55347 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PKNOX1P55347 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
PKNOX1P55347 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.55
PKNOX1P55347 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
PKNOX1P55347 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC18.52■□□□□ 0.55
PKNOX1P55347 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC18.52■□□□□ 0.55
PKNOX1P55347 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
PKNOX1P55347 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
PKNOX1P55347 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
PKNOX1P55347 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
PKNOX1P55347 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC18.51■□□□□ 0.55
PKNOX1P55347 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
PKNOX1P55347 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC18.51■□□□□ 0.55
PKNOX1P55347 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PKNOX1P55347 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PKNOX1P55347 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PKNOX1P55347 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC18.51■□□□□ 0.55
PKNOX1P55347 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC18.51■□□□□ 0.55
PKNOX1P55347 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PKNOX1P55347 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PKNOX1P55347 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC18.51■□□□□ 0.55
PKNOX1P55347 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PKNOX1P55347 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC18.51■□□□□ 0.55
PKNOX1P55347 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PKNOX1P55347 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PKNOX1P55347 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC18.51■□□□□ 0.55
PKNOX1P55347 BICD1-207ENST00000551848 1962 ntBASIC18.51■□□□□ 0.55
PKNOX1P55347 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PKNOX1P55347 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PKNOX1P55347 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
PKNOX1P55347 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PKNOX1P55347 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PKNOX1P55347 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
PKNOX1P55347 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC18.51■□□□□ 0.55
PKNOX1P55347 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC18.5■□□□□ 0.55
PKNOX1P55347 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
PKNOX1P55347 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PKNOX1P55347 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC18.5■□□□□ 0.55
PKNOX1P55347 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC18.5■□□□□ 0.55
PKNOX1P55347 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC18.5■□□□□ 0.55
PKNOX1P55347 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms