Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
HMGCS2P54868 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
HMGCS2P54868 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
HMGCS2P54868 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC21.81■■□□□ 1.08
HMGCS2P54868 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC21.81■■□□□ 1.08
HMGCS2P54868 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC21.81■■□□□ 1.08
HMGCS2P54868 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC21.81■■□□□ 1.08
HMGCS2P54868 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC21.81■■□□□ 1.08
HMGCS2P54868 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC21.81■■□□□ 1.08
HMGCS2P54868 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
HMGCS2P54868 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
HMGCS2P54868 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
HMGCS2P54868 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC21.8■■□□□ 1.08
HMGCS2P54868 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.08
HMGCS2P54868 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC21.8■■□□□ 1.08
HMGCS2P54868 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
HMGCS2P54868 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
HMGCS2P54868 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC21.8■■□□□ 1.08
HMGCS2P54868 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
HMGCS2P54868 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
HMGCS2P54868 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.08
HMGCS2P54868 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
HMGCS2P54868 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
HMGCS2P54868 AC004870.1-201ENST00000315132 882 ntBASIC21.8■■□□□ 1.08
HMGCS2P54868 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
HMGCS2P54868 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
HMGCS2P54868 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC21.8■■□□□ 1.08
HMGCS2P54868 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC21.8■■□□□ 1.08
HMGCS2P54868 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC21.8■■□□□ 1.08
HMGCS2P54868 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC21.8■■□□□ 1.08
HMGCS2P54868 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC21.8■■□□□ 1.08
HMGCS2P54868 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
HMGCS2P54868 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
HMGCS2P54868 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
HMGCS2P54868 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC21.8■■□□□ 1.08
HMGCS2P54868 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC21.8■■□□□ 1.08
HMGCS2P54868 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC21.8■■□□□ 1.08
HMGCS2P54868 TREX1-205ENST00000625293 1783 ntBASIC21.79■■□□□ 1.08
HMGCS2P54868 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC21.79■■□□□ 1.08
HMGCS2P54868 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
HMGCS2P54868 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
HMGCS2P54868 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
HMGCS2P54868 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
HMGCS2P54868 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
HMGCS2P54868 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC21.79■■□□□ 1.08
HMGCS2P54868 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC21.79■■□□□ 1.08
HMGCS2P54868 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
HMGCS2P54868 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC21.79■■□□□ 1.08
HMGCS2P54868 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC21.79■■□□□ 1.08
HMGCS2P54868 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC21.79■■□□□ 1.08
HMGCS2P54868 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC21.79■■□□□ 1.08
HMGCS2P54868 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
HMGCS2P54868 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
HMGCS2P54868 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
HMGCS2P54868 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
HMGCS2P54868 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
HMGCS2P54868 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
HMGCS2P54868 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
HMGCS2P54868 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC21.79■■□□□ 1.08
HMGCS2P54868 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
HMGCS2P54868 KATNBL1P6-202ENST00000562413 1466 ntBASIC21.78■■□□□ 1.08
HMGCS2P54868 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC21.78■■□□□ 1.08
HMGCS2P54868 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC21.78■■□□□ 1.08
HMGCS2P54868 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
HMGCS2P54868 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
HMGCS2P54868 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
HMGCS2P54868 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC21.78■■□□□ 1.08
HMGCS2P54868 NUS1P1-201ENST00000446295 882 ntBASIC21.78■■□□□ 1.08
HMGCS2P54868 FDX1P1-201ENST00000449115 551 ntBASIC21.78■■□□□ 1.08
HMGCS2P54868 TPSP2-201ENST00000561760 610 ntBASIC21.78■■□□□ 1.08
HMGCS2P54868 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
HMGCS2P54868 TBCB-205ENST00000585746 875 ntTSL 3 BASIC21.78■■□□□ 1.08
HMGCS2P54868 AC010240.3-201ENST00000607688 395 ntBASIC21.78■■□□□ 1.08
HMGCS2P54868 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
HMGCS2P54868 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
HMGCS2P54868 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC21.78■■□□□ 1.08
HMGCS2P54868 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC21.78■■□□□ 1.08
HMGCS2P54868 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
HMGCS2P54868 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
HMGCS2P54868 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
HMGCS2P54868 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
HMGCS2P54868 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
HMGCS2P54868 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC21.77■■□□□ 1.08
HMGCS2P54868 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
HMGCS2P54868 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
HMGCS2P54868 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
HMGCS2P54868 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
HMGCS2P54868 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC21.77■■□□□ 1.08
HMGCS2P54868 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
HMGCS2P54868 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
HMGCS2P54868 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC21.77■■□□□ 1.08
HMGCS2P54868 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
HMGCS2P54868 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
HMGCS2P54868 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
HMGCS2P54868 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC21.77■■□□□ 1.08
HMGCS2P54868 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
HMGCS2P54868 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
HMGCS2P54868 ENSA-205ENST00000361532 792 ntTSL 2 BASIC21.77■■□□□ 1.08
HMGCS2P54868 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC21.77■■□□□ 1.08
HMGCS2P54868 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms