Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SOX2P48431 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SOX2P48431 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC16.64■□□□□ 0.25
SOX2P48431 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
SOX2P48431 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC16.64■□□□□ 0.25
SOX2P48431 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
SOX2P48431 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
SOX2P48431 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
SOX2P48431 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC16.64■□□□□ 0.25
SOX2P48431 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC16.64■□□□□ 0.25
SOX2P48431 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SOX2P48431 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
SOX2P48431 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC16.63■□□□□ 0.25
SOX2P48431 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC16.63■□□□□ 0.25
SOX2P48431 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC16.63■□□□□ 0.25
SOX2P48431 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SOX2P48431 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC16.63■□□□□ 0.25
SOX2P48431 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SOX2P48431 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC16.63■□□□□ 0.25
SOX2P48431 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC16.63■□□□□ 0.25
SOX2P48431 METTL15-202ENST00000403099 795 ntTSL 5 BASIC16.63■□□□□ 0.25
SOX2P48431 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC16.63■□□□□ 0.25
SOX2P48431 TUBB8P6-201ENST00000436895 1288 ntBASIC16.63■□□□□ 0.25
SOX2P48431 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC16.63■□□□□ 0.25
SOX2P48431 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC16.63■□□□□ 0.25
SOX2P48431 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC16.63■□□□□ 0.25
SOX2P48431 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC16.63■□□□□ 0.25
SOX2P48431 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SOX2P48431 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
SOX2P48431 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
SOX2P48431 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
SOX2P48431 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC16.63■□□□□ 0.25
SOX2P48431 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SOX2P48431 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC16.63■□□□□ 0.25
SOX2P48431 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SOX2P48431 AC092368.3-202ENST00000574180 1591 ntBASIC16.63■□□□□ 0.25
SOX2P48431 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC16.63■□□□□ 0.25
SOX2P48431 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
SOX2P48431 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SOX2P48431 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC16.63■□□□□ 0.25
SOX2P48431 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
SOX2P48431 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
SOX2P48431 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SOX2P48431 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
SOX2P48431 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
SOX2P48431 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SOX2P48431 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC16.62■□□□□ 0.25
SOX2P48431 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
SOX2P48431 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC16.62■□□□□ 0.25
SOX2P48431 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC16.62■□□□□ 0.25
SOX2P48431 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
SOX2P48431 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SOX2P48431 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
SOX2P48431 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SOX2P48431 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
SOX2P48431 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC16.62■□□□□ 0.25
SOX2P48431 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC16.62■□□□□ 0.25
SOX2P48431 AC026185.1-201ENST00000445748 174 ntBASIC16.62■□□□□ 0.25
SOX2P48431 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SOX2P48431 KRT18P16-201ENST00000510337 1294 ntBASIC16.62■□□□□ 0.25
SOX2P48431 AC091874.3-201ENST00000512672 1195 ntBASIC16.62■□□□□ 0.25
SOX2P48431 BET1L-207ENST00000529614 560 ntTSL 5 BASIC16.62■□□□□ 0.25
SOX2P48431 REXO2-208ENST00000539754 791 ntTSL 2 BASIC16.62■□□□□ 0.25
SOX2P48431 OAS3-207ENST00000551007 998 ntTSL 2 BASIC16.62■□□□□ 0.25
SOX2P48431 MAX-217ENST00000557277 728 ntTSL 3 BASIC16.62■□□□□ 0.25
SOX2P48431 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SOX2P48431 IKBKGP1-201ENST00000612193 1073 ntBASIC16.62■□□□□ 0.25
SOX2P48431 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC16.62■□□□□ 0.25
SOX2P48431 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC16.62■□□□□ 0.25
SOX2P48431 AC092437.1-201ENST00000624794 1048 ntBASIC16.62■□□□□ 0.25
SOX2P48431 AC083906.6-201ENST00000641366 219 ntBASIC16.62■□□□□ 0.25
SOX2P48431 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SOX2P48431 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SOX2P48431 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC16.62■□□□□ 0.25
SOX2P48431 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SOX2P48431 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
SOX2P48431 NOC2LP1-202ENST00000452600 2235 ntBASIC16.62■□□□□ 0.25
SOX2P48431 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SOX2P48431 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SOX2P48431 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SOX2P48431 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SOX2P48431 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SOX2P48431 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SOX2P48431 LTB4R2-202ENST00000528054 3092 ntBASIC16.61■□□□□ 0.25
SOX2P48431 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SOX2P48431 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SOX2P48431 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC16.61■□□□□ 0.25
SOX2P48431 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SOX2P48431 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SOX2P48431 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
SOX2P48431 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SOX2P48431 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
SOX2P48431 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
SOX2P48431 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
SOX2P48431 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SOX2P48431 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
SOX2P48431 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SOX2P48431 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SOX2P48431 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
SOX2P48431 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms