Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PTPN9P43378 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC19.65■□□□□ 0.74
PTPN9P43378 AL023803.3-201ENST00000615559 522 ntBASIC19.65■□□□□ 0.74
PTPN9P43378 MTMR9LP-203ENST00000426597 1545 ntBASIC19.65■□□□□ 0.74
PTPN9P43378 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC19.65■□□□□ 0.74
PTPN9P43378 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC19.65■□□□□ 0.74
PTPN9P43378 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC19.65■□□□□ 0.74
PTPN9P43378 AL138781.2-201ENST00000617896 1843 ntBASIC19.65■□□□□ 0.74
PTPN9P43378 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC19.64■□□□□ 0.74
PTPN9P43378 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
PTPN9P43378 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
PTPN9P43378 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC19.64■□□□□ 0.74
PTPN9P43378 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
PTPN9P43378 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC19.64■□□□□ 0.74
PTPN9P43378 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC19.64■□□□□ 0.73
PTPN9P43378 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
PTPN9P43378 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
PTPN9P43378 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC19.64■□□□□ 0.73
PTPN9P43378 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC19.64■□□□□ 0.73
PTPN9P43378 RCC2P3-201ENST00000418112 1537 ntBASIC19.64■□□□□ 0.73
PTPN9P43378 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
PTPN9P43378 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC19.64■□□□□ 0.73
PTPN9P43378 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC19.64■□□□□ 0.73
PTPN9P43378 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
PTPN9P43378 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC19.64■□□□□ 0.73
PTPN9P43378 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
PTPN9P43378 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
PTPN9P43378 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
PTPN9P43378 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PTPN9P43378 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
PTPN9P43378 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC19.63■□□□□ 0.73
PTPN9P43378 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
PTPN9P43378 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PTPN9P43378 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PTPN9P43378 COBL-210ENST00000632460 1941 ntTSL 5 BASIC19.63■□□□□ 0.73
PTPN9P43378 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC19.63■□□□□ 0.73
PTPN9P43378 NFYC-AS1-201ENST00000606277 1687 ntBASIC19.63■□□□□ 0.73
PTPN9P43378 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PTPN9P43378 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PTPN9P43378 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PTPN9P43378 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PTPN9P43378 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC19.63■□□□□ 0.73
PTPN9P43378 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
PTPN9P43378 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PTPN9P43378 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PTPN9P43378 BUB3-202ENST00000368859 667 ntTSL 3 BASIC19.63■□□□□ 0.73
PTPN9P43378 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC19.63■□□□□ 0.73
PTPN9P43378 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC19.63■□□□□ 0.73
PTPN9P43378 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC19.63■□□□□ 0.73
PTPN9P43378 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
PTPN9P43378 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC19.63■□□□□ 0.73
PTPN9P43378 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
PTPN9P43378 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
PTPN9P43378 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
PTPN9P43378 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
PTPN9P43378 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC19.63■□□□□ 0.73
PTPN9P43378 AL109659.2-201ENST00000606809 1674 ntBASIC19.62■□□□□ 0.73
PTPN9P43378 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
PTPN9P43378 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
PTPN9P43378 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
PTPN9P43378 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC19.62■□□□□ 0.73
PTPN9P43378 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
PTPN9P43378 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC19.62■□□□□ 0.73
PTPN9P43378 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC19.62■□□□□ 0.73
PTPN9P43378 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
PTPN9P43378 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
PTPN9P43378 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC19.62■□□□□ 0.73
PTPN9P43378 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
PTPN9P43378 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
PTPN9P43378 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC19.62■□□□□ 0.73
PTPN9P43378 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC19.62■□□□□ 0.73
PTPN9P43378 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC19.62■□□□□ 0.73
PTPN9P43378 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
PTPN9P43378 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC19.61■□□□□ 0.73
PTPN9P43378 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
PTPN9P43378 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
PTPN9P43378 SNAI3-AS1-205ENST00000568633 2096 ntBASIC19.61■□□□□ 0.73
PTPN9P43378 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC19.61■□□□□ 0.73
PTPN9P43378 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PTPN9P43378 AL023284.2-201ENST00000405850 579 ntBASIC19.61■□□□□ 0.73
PTPN9P43378 TSPY17P-201ENST00000450329 467 ntBASIC19.61■□□□□ 0.73
PTPN9P43378 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC19.61■□□□□ 0.73
PTPN9P43378 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC19.61■□□□□ 0.73
PTPN9P43378 C2orf69P3-201ENST00000565542 1120 ntBASIC19.61■□□□□ 0.73
PTPN9P43378 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC19.61■□□□□ 0.73
PTPN9P43378 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC19.61■□□□□ 0.73
PTPN9P43378 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PTPN9P43378 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
PTPN9P43378 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC19.6■□□□□ 0.73
PTPN9P43378 AC092338.2-201ENST00000568827 1415 ntBASIC19.6■□□□□ 0.73
PTPN9P43378 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PTPN9P43378 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC19.6■□□□□ 0.73
PTPN9P43378 ANO7L1-203ENST00000602586 1720 ntBASIC19.6■□□□□ 0.73
PTPN9P43378 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
PTPN9P43378 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC19.6■□□□□ 0.73
PTPN9P43378 GPAT2P1-201ENST00000444924 1672 ntBASIC19.6■□□□□ 0.73
PTPN9P43378 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.6■□□□□ 0.73
PTPN9P43378 TSPY14P-201ENST00000303979 915 ntBASIC19.6■□□□□ 0.73
PTPN9P43378 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC19.6■□□□□ 0.73
PTPN9P43378 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms