Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
COL5A1P20908 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC18.14■□□□□ 0.5
COL5A1P20908 UBC-206ENST00000538617 1303 ntTSL 5 BASIC18.14■□□□□ 0.5
COL5A1P20908 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.5
COL5A1P20908 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.5
COL5A1P20908 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC18.14■□□□□ 0.5
COL5A1P20908 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC18.14■□□□□ 0.5
COL5A1P20908 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.5
COL5A1P20908 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.5
COL5A1P20908 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.5
COL5A1P20908 AC104819.1-201ENST00000504587 486 ntBASIC18.14■□□□□ 0.5
COL5A1P20908 AC104390.1-201ENST00000555663 520 ntBASIC18.14■□□□□ 0.5
COL5A1P20908 AC074051.2-201ENST00000565115 352 ntBASIC18.14■□□□□ 0.5
COL5A1P20908 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
COL5A1P20908 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
COL5A1P20908 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
COL5A1P20908 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL5A1P20908 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC18.14■□□□□ 0.49
COL5A1P20908 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
COL5A1P20908 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL5A1P20908 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL5A1P20908 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC18.14■□□□□ 0.49
COL5A1P20908 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL5A1P20908 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
COL5A1P20908 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL5A1P20908 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC18.14■□□□□ 0.49
COL5A1P20908 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL5A1P20908 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
COL5A1P20908 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC18.14■□□□□ 0.49
COL5A1P20908 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC18.14■□□□□ 0.49
COL5A1P20908 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC18.14■□□□□ 0.49
COL5A1P20908 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC18.14■□□□□ 0.49
COL5A1P20908 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
COL5A1P20908 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
COL5A1P20908 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL5A1P20908 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC18.13■□□□□ 0.49
COL5A1P20908 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL5A1P20908 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
COL5A1P20908 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC18.13■□□□□ 0.49
COL5A1P20908 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL5A1P20908 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL5A1P20908 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL5A1P20908 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
COL5A1P20908 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
COL5A1P20908 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL5A1P20908 KRT18P31-201ENST00000506277 1292 ntBASIC18.13■□□□□ 0.49
COL5A1P20908 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
COL5A1P20908 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC18.13■□□□□ 0.49
COL5A1P20908 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
COL5A1P20908 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC18.13■□□□□ 0.49
COL5A1P20908 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL5A1P20908 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL5A1P20908 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC18.13■□□□□ 0.49
COL5A1P20908 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL5A1P20908 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
COL5A1P20908 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
COL5A1P20908 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC18.12■□□□□ 0.49
COL5A1P20908 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC18.12■□□□□ 0.49
COL5A1P20908 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC18.12■□□□□ 0.49
COL5A1P20908 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL5A1P20908 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL5A1P20908 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC18.12■□□□□ 0.49
COL5A1P20908 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
COL5A1P20908 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC18.12■□□□□ 0.49
COL5A1P20908 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC18.12■□□□□ 0.49
COL5A1P20908 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC18.12■□□□□ 0.49
COL5A1P20908 AP002469.2-201ENST00000531724 424 ntBASIC18.12■□□□□ 0.49
COL5A1P20908 AL671883.3-201ENST00000603274 991 ntBASIC18.12■□□□□ 0.49
COL5A1P20908 AC010240.3-201ENST00000607688 395 ntBASIC18.12■□□□□ 0.49
COL5A1P20908 AL121772.3-201ENST00000610840 674 ntBASIC18.12■□□□□ 0.49
COL5A1P20908 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
COL5A1P20908 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL5A1P20908 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL5A1P20908 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
COL5A1P20908 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL5A1P20908 ME2-218ENST00000640965 2476 ntTSL 5 BASIC18.12■□□□□ 0.49
COL5A1P20908 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC18.12■□□□□ 0.49
COL5A1P20908 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL5A1P20908 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL5A1P20908 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL5A1P20908 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
COL5A1P20908 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
COL5A1P20908 MED17-221ENST00000639724 2317 ntTSL 5 BASIC18.12■□□□□ 0.49
COL5A1P20908 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
COL5A1P20908 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL5A1P20908 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
COL5A1P20908 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
COL5A1P20908 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC18.12■□□□□ 0.49
COL5A1P20908 AP000867.3-201ENST00000524675 377 ntBASIC18.12■□□□□ 0.49
COL5A1P20908 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC18.12■□□□□ 0.49
COL5A1P20908 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC18.12■□□□□ 0.49
COL5A1P20908 CALM1-205ENST00000553542 877 ntTSL 5 BASIC18.12■□□□□ 0.49
COL5A1P20908 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC18.12■□□□□ 0.49
COL5A1P20908 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
COL5A1P20908 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
COL5A1P20908 Z82202.1-201ENST00000623446 1880 ntBASIC18.11■□□□□ 0.49
COL5A1P20908 AC233702.3-201ENST00000578656 1387 ntBASIC18.11■□□□□ 0.49
COL5A1P20908 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL5A1P20908 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
COL5A1P20908 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms