Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
SHOX2O60902 CASP6-205ENST00000505486 538 ntTSL 4 BASIC18.94■□□□□ 0.62
SHOX2O60902 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC18.94■□□□□ 0.62
SHOX2O60902 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC18.94■□□□□ 0.62
SHOX2O60902 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SHOX2O60902 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
SHOX2O60902 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SHOX2O60902 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SHOX2O60902 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SHOX2O60902 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
SHOX2O60902 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SHOX2O60902 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SHOX2O60902 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SHOX2O60902 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SHOX2O60902 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SHOX2O60902 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SHOX2O60902 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC18.93■□□□□ 0.62
SHOX2O60902 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SHOX2O60902 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SHOX2O60902 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
SHOX2O60902 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SHOX2O60902 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
SHOX2O60902 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC18.93■□□□□ 0.62
SHOX2O60902 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC18.93■□□□□ 0.62
SHOX2O60902 AC023632.3-201ENST00000521633 145 ntBASIC18.93■□□□□ 0.62
SHOX2O60902 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC18.93■□□□□ 0.62
SHOX2O60902 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC18.93■□□□□ 0.62
SHOX2O60902 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC18.93■□□□□ 0.62
SHOX2O60902 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC18.93■□□□□ 0.62
SHOX2O60902 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SHOX2O60902 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SHOX2O60902 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC18.93■□□□□ 0.62
SHOX2O60902 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SHOX2O60902 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SHOX2O60902 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SHOX2O60902 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
SHOX2O60902 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
SHOX2O60902 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SHOX2O60902 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
SHOX2O60902 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
SHOX2O60902 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SHOX2O60902 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC18.92■□□□□ 0.62
SHOX2O60902 AL121761.2-201ENST00000598007 1648 ntBASIC18.92■□□□□ 0.62
SHOX2O60902 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SHOX2O60902 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SHOX2O60902 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SHOX2O60902 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC18.92■□□□□ 0.62
SHOX2O60902 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SHOX2O60902 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SHOX2O60902 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
SHOX2O60902 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SHOX2O60902 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
SHOX2O60902 IRS3P-201ENST00000223076 1006 ntBASIC18.92■□□□□ 0.62
SHOX2O60902 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SHOX2O60902 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC18.92■□□□□ 0.62
SHOX2O60902 AC142381.2-201ENST00000566120 298 ntBASIC18.92■□□□□ 0.62
SHOX2O60902 AC104187.1-201ENST00000607510 612 ntBASIC18.92■□□□□ 0.62
SHOX2O60902 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC18.92■□□□□ 0.62
SHOX2O60902 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
SHOX2O60902 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SHOX2O60902 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
SHOX2O60902 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SHOX2O60902 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SHOX2O60902 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
SHOX2O60902 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SHOX2O60902 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SHOX2O60902 AC019069.1-201ENST00000610008 1333 ntBASIC18.92■□□□□ 0.62
SHOX2O60902 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SHOX2O60902 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
SHOX2O60902 POR-209ENST00000439269 1858 ntTSL 2 BASIC18.92■□□□□ 0.62
SHOX2O60902 GAS2L1P2-201ENST00000436355 1356 ntBASIC18.92■□□□□ 0.62
SHOX2O60902 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
SHOX2O60902 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
SHOX2O60902 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
SHOX2O60902 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SHOX2O60902 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SHOX2O60902 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
SHOX2O60902 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
SHOX2O60902 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC18.91■□□□□ 0.62
SHOX2O60902 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SHOX2O60902 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC18.91■□□□□ 0.62
SHOX2O60902 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SHOX2O60902 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SHOX2O60902 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SHOX2O60902 AL162727.3-201ENST00000635661 2787 ntBASIC18.91■□□□□ 0.62
SHOX2O60902 AL499627.1-201ENST00000569373 2188 ntBASIC18.91■□□□□ 0.62
SHOX2O60902 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SHOX2O60902 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SHOX2O60902 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC18.91■□□□□ 0.62
SHOX2O60902 HYI-206ENST00000372434 1025 ntTSL 5 BASIC18.91■□□□□ 0.62
SHOX2O60902 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SHOX2O60902 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
SHOX2O60902 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SHOX2O60902 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
SHOX2O60902 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SHOX2O60902 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC18.91■□□□□ 0.62
SHOX2O60902 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC18.91■□□□□ 0.62
SHOX2O60902 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
SHOX2O60902 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SHOX2O60902 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms