Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC16.71■□□□□ 0.27
SGCEO43556 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SGCEO43556 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC16.71■□□□□ 0.27
SGCEO43556 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
SGCEO43556 AC020763.4-201ENST00000623414 4170 ntBASIC16.71■□□□□ 0.27
SGCEO43556 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SGCEO43556 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
SGCEO43556 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC16.71■□□□□ 0.27
SGCEO43556 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC16.71■□□□□ 0.27
SGCEO43556 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
SGCEO43556 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
SGCEO43556 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC16.7■□□□□ 0.26
SGCEO43556 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SGCEO43556 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
SGCEO43556 TNXA-203ENST00000507684 2038 ntBASIC16.7■□□□□ 0.26
SGCEO43556 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
SGCEO43556 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
SGCEO43556 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
SGCEO43556 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SGCEO43556 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC16.7■□□□□ 0.26
SGCEO43556 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
SGCEO43556 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC16.7■□□□□ 0.26
SGCEO43556 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
SGCEO43556 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SGCEO43556 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SGCEO43556 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SGCEO43556 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
SGCEO43556 PPP1R14BP5-201ENST00000440334 435 ntBASIC16.7■□□□□ 0.26
SGCEO43556 GCSHP5-201ENST00000443090 522 ntBASIC16.7■□□□□ 0.26
SGCEO43556 UBE2SP1-201ENST00000450587 669 ntBASIC16.7■□□□□ 0.26
SGCEO43556 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
SGCEO43556 GLRB-205ENST00000512619 728 ntTSL 3 BASIC16.7■□□□□ 0.26
SGCEO43556 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
SGCEO43556 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC16.7■□□□□ 0.26
SGCEO43556 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC16.7■□□□□ 0.26
SGCEO43556 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
SGCEO43556 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC16.7■□□□□ 0.26
SGCEO43556 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SGCEO43556 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
SGCEO43556 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SGCEO43556 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC16.7■□□□□ 0.26
SGCEO43556 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
SGCEO43556 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
SGCEO43556 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
SGCEO43556 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
SGCEO43556 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
SGCEO43556 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
SGCEO43556 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SGCEO43556 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SGCEO43556 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SGCEO43556 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SGCEO43556 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
SGCEO43556 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
SGCEO43556 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SGCEO43556 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC16.69■□□□□ 0.26
SGCEO43556 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SGCEO43556 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC16.69■□□□□ 0.26
SGCEO43556 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SGCEO43556 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SGCEO43556 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC16.69■□□□□ 0.26
SGCEO43556 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC16.69■□□□□ 0.26
SGCEO43556 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SGCEO43556 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC16.69■□□□□ 0.26
SGCEO43556 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SGCEO43556 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SGCEO43556 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SGCEO43556 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
SGCEO43556 TSPY23P-201ENST00000440136 739 ntBASIC16.69■□□□□ 0.26
SGCEO43556 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SGCEO43556 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC16.69■□□□□ 0.26
SGCEO43556 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC16.69■□□□□ 0.26
SGCEO43556 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC16.69■□□□□ 0.26
SGCEO43556 AL031985.4-201ENST00000642138 673 ntBASIC16.69■□□□□ 0.26
SGCEO43556 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SGCEO43556 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
SGCEO43556 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
SGCEO43556 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SGCEO43556 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SGCEO43556 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SGCEO43556 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
SGCEO43556 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SGCEO43556 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
SGCEO43556 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
SGCEO43556 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
SGCEO43556 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC16.69■□□□□ 0.26
SGCEO43556 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SGCEO43556 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
SGCEO43556 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SGCEO43556 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SGCEO43556 GOLGA6L5P-202ENST00000515341 1828 ntBASIC16.68■□□□□ 0.26
SGCEO43556 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SGCEO43556 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC16.68■□□□□ 0.26
SGCEO43556 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
SGCEO43556 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SGCEO43556 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SGCEO43556 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SGCEO43556 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
SGCEO43556 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SGCEO43556 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
SGCEO43556 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms