Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC18.41■□□□□ 0.54
HDAC3O15379 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
HDAC3O15379 LTB4R2-202ENST00000528054 3092 ntBASIC18.41■□□□□ 0.54
HDAC3O15379 HCG11-201ENST00000411553 5696 ntBASIC18.4■□□□□ 0.54
HDAC3O15379 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HDAC3O15379 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HDAC3O15379 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC18.4■□□□□ 0.54
HDAC3O15379 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HDAC3O15379 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
HDAC3O15379 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
HDAC3O15379 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HDAC3O15379 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HDAC3O15379 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HDAC3O15379 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
HDAC3O15379 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HDAC3O15379 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HDAC3O15379 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HDAC3O15379 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HDAC3O15379 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC18.4■□□□□ 0.54
HDAC3O15379 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HDAC3O15379 TSPY23P-201ENST00000440136 739 ntBASIC18.4■□□□□ 0.54
HDAC3O15379 AC026185.1-201ENST00000445748 174 ntBASIC18.4■□□□□ 0.54
HDAC3O15379 GATS-209ENST00000454084 1030 ntTSL 3 BASIC18.4■□□□□ 0.54
HDAC3O15379 SLC29A4P2-201ENST00000504749 1089 ntBASIC18.4■□□□□ 0.54
HDAC3O15379 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC18.4■□□□□ 0.54
HDAC3O15379 BET1L-207ENST00000529614 560 ntTSL 5 BASIC18.4■□□□□ 0.54
HDAC3O15379 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC18.4■□□□□ 0.54
HDAC3O15379 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC18.4■□□□□ 0.54
HDAC3O15379 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HDAC3O15379 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HDAC3O15379 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HDAC3O15379 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC18.4■□□□□ 0.54
HDAC3O15379 AC067852.2-201ENST00000590513 2313 ntBASIC18.4■□□□□ 0.54
HDAC3O15379 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
HDAC3O15379 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HDAC3O15379 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
HDAC3O15379 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
HDAC3O15379 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC18.4■□□□□ 0.54
HDAC3O15379 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
HDAC3O15379 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC18.39■□□□□ 0.54
HDAC3O15379 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
HDAC3O15379 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.54
HDAC3O15379 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.54
HDAC3O15379 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
HDAC3O15379 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HDAC3O15379 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC18.39■□□□□ 0.53
HDAC3O15379 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HDAC3O15379 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HDAC3O15379 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC18.39■□□□□ 0.53
HDAC3O15379 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC18.39■□□□□ 0.53
HDAC3O15379 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC18.39■□□□□ 0.53
HDAC3O15379 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC18.39■□□□□ 0.53
HDAC3O15379 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC18.39■□□□□ 0.53
HDAC3O15379 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC18.39■□□□□ 0.53
HDAC3O15379 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HDAC3O15379 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
HDAC3O15379 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
HDAC3O15379 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
HDAC3O15379 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HDAC3O15379 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC18.39■□□□□ 0.53
HDAC3O15379 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC18.39■□□□□ 0.53
HDAC3O15379 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
HDAC3O15379 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HDAC3O15379 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
HDAC3O15379 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC18.38■□□□□ 0.53
HDAC3O15379 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HDAC3O15379 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HDAC3O15379 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
HDAC3O15379 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HDAC3O15379 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HDAC3O15379 CD276-203ENST00000537340 2439 ntTSL 2 BASIC18.38■□□□□ 0.53
HDAC3O15379 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
HDAC3O15379 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
HDAC3O15379 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HDAC3O15379 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HDAC3O15379 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC18.38■□□□□ 0.53
HDAC3O15379 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC18.38■□□□□ 0.53
HDAC3O15379 PNMA6B-201ENST00000538162 1200 ntBASIC18.38■□□□□ 0.53
HDAC3O15379 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC18.38■□□□□ 0.53
HDAC3O15379 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC18.38■□□□□ 0.53
HDAC3O15379 MIR5787-201ENST00000611784 55 ntBASIC18.38■□□□□ 0.53
HDAC3O15379 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC18.38■□□□□ 0.53
HDAC3O15379 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC18.38■□□□□ 0.53
HDAC3O15379 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HDAC3O15379 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
HDAC3O15379 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HDAC3O15379 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HDAC3O15379 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC18.38■□□□□ 0.53
HDAC3O15379 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HDAC3O15379 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HDAC3O15379 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
HDAC3O15379 HEIH-201ENST00000623091 1652 ntBASIC18.38■□□□□ 0.53
HDAC3O15379 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HDAC3O15379 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC18.37■□□□□ 0.53
HDAC3O15379 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HDAC3O15379 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC18.37■□□□□ 0.53
HDAC3O15379 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
HDAC3O15379 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HDAC3O15379 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HDAC3O15379 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms