Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SMKR1H3BMG3 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SMKR1H3BMG3 MKRN4P-201ENST00000444706 1521 ntBASIC13.83□□□□□ -0.2
SMKR1H3BMG3 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC13.83□□□□□ -0.2
SMKR1H3BMG3 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
SMKR1H3BMG3 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC13.83□□□□□ -0.2
SMKR1H3BMG3 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
SMKR1H3BMG3 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC13.83□□□□□ -0.2
SMKR1H3BMG3 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
SMKR1H3BMG3 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC13.83□□□□□ -0.2
SMKR1H3BMG3 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC13.83□□□□□ -0.2
SMKR1H3BMG3 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
SMKR1H3BMG3 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
SMKR1H3BMG3 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
SMKR1H3BMG3 GATB-213ENST00000515812 1893 ntTSL 5 BASIC13.82□□□□□ -0.2
SMKR1H3BMG3 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
SMKR1H3BMG3 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
SMKR1H3BMG3 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC13.82□□□□□ -0.2
SMKR1H3BMG3 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
SMKR1H3BMG3 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
SMKR1H3BMG3 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
SMKR1H3BMG3 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
SMKR1H3BMG3 ESPNP-201ENST00000270691 2015 ntBASIC13.82□□□□□ -0.2
SMKR1H3BMG3 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
SMKR1H3BMG3 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC13.82□□□□□ -0.2
SMKR1H3BMG3 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
SMKR1H3BMG3 AC142381.2-201ENST00000566120 298 ntBASIC13.82□□□□□ -0.2
SMKR1H3BMG3 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC13.82□□□□□ -0.2
SMKR1H3BMG3 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
SMKR1H3BMG3 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC13.82□□□□□ -0.2
SMKR1H3BMG3 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC13.82□□□□□ -0.2
SMKR1H3BMG3 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
SMKR1H3BMG3 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC13.82□□□□□ -0.2
SMKR1H3BMG3 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
SMKR1H3BMG3 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
SMKR1H3BMG3 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC13.82□□□□□ -0.2
SMKR1H3BMG3 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
SMKR1H3BMG3 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
SMKR1H3BMG3 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC13.82□□□□□ -0.2
SMKR1H3BMG3 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
SMKR1H3BMG3 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
SMKR1H3BMG3 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC13.82□□□□□ -0.2
SMKR1H3BMG3 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
SMKR1H3BMG3 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC13.82□□□□□ -0.2
SMKR1H3BMG3 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
SMKR1H3BMG3 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
SMKR1H3BMG3 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
SMKR1H3BMG3 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
SMKR1H3BMG3 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC13.81□□□□□ -0.2
SMKR1H3BMG3 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
SMKR1H3BMG3 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
SMKR1H3BMG3 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
SMKR1H3BMG3 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
SMKR1H3BMG3 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
SMKR1H3BMG3 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC13.81□□□□□ -0.2
SMKR1H3BMG3 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
SMKR1H3BMG3 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
SMKR1H3BMG3 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
SMKR1H3BMG3 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
SMKR1H3BMG3 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
SMKR1H3BMG3 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
SMKR1H3BMG3 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
SMKR1H3BMG3 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
SMKR1H3BMG3 AL355472.2-201ENST00000422958 438 ntBASIC13.81□□□□□ -0.2
SMKR1H3BMG3 NALT1-201ENST00000429224 738 ntTSL 5 BASIC13.81□□□□□ -0.2
SMKR1H3BMG3 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC13.81□□□□□ -0.2
SMKR1H3BMG3 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC13.81□□□□□ -0.2
SMKR1H3BMG3 RARRES2P4-201ENST00000514074 484 ntBASIC13.81□□□□□ -0.2
SMKR1H3BMG3 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
SMKR1H3BMG3 PLLP-204ENST00000569059 665 ntTSL 3 BASIC13.81□□□□□ -0.2
SMKR1H3BMG3 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
SMKR1H3BMG3 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
SMKR1H3BMG3 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
SMKR1H3BMG3 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
SMKR1H3BMG3 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
SMKR1H3BMG3 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC13.81□□□□□ -0.2
SMKR1H3BMG3 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
SMKR1H3BMG3 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC13.81□□□□□ -0.2
SMKR1H3BMG3 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
SMKR1H3BMG3 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC13.81□□□□□ -0.2
SMKR1H3BMG3 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
SMKR1H3BMG3 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
SMKR1H3BMG3 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
SMKR1H3BMG3 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
SMKR1H3BMG3 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC13.81□□□□□ -0.2
SMKR1H3BMG3 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
SMKR1H3BMG3 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SMKR1H3BMG3 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
SMKR1H3BMG3 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC13.8□□□□□ -0.2
SMKR1H3BMG3 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC13.8□□□□□ -0.2
SMKR1H3BMG3 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC13.8□□□□□ -0.2
SMKR1H3BMG3 COBL-210ENST00000632460 1941 ntTSL 5 BASIC13.8□□□□□ -0.2
SMKR1H3BMG3 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
SMKR1H3BMG3 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
SMKR1H3BMG3 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SMKR1H3BMG3 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
SMKR1H3BMG3 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
SMKR1H3BMG3 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC13.8□□□□□ -0.2
SMKR1H3BMG3 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SMKR1H3BMG3 CALM3-202ENST00000391918 702 ntTSL 2 BASIC13.8□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms