Protein–RNA interactions for Protein: P56159

GFRA1, GDNF family receptor alpha-1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA1P56159 RN7SL75P-201ENST00000461926 281 ntBASIC2.58□□□□□ -2
GFRA1P56159 NDUFA4P2-201ENST00000489989 244 ntBASIC2.58□□□□□ -2
GFRA1P56159 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC2.58□□□□□ -2
GFRA1P56159 AC087685.1-201ENST00000587507 141 ntBASIC2.58□□□□□ -2
GFRA1P56159 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC2.58□□□□□ -2
GFRA1P56159 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.58□□□□□ -2
GFRA1P56159 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2.58□□□□□ -2
GFRA1P56159 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.57□□□□□ -2
GFRA1P56159 SNORA25.7-201ENST00000364375 127 ntBASIC2.57□□□□□ -2
GFRA1P56159 RNU6-81P-201ENST00000365608 104 ntBASIC2.57□□□□□ -2
GFRA1P56159 MIR518A2-201ENST00000384966 87 ntBASIC2.57□□□□□ -2
GFRA1P56159 RNA5SP270-201ENST00000411361 118 ntBASIC2.57□□□□□ -2
GFRA1P56159 AC245047.4-201ENST00000433189 144 ntBASIC2.57□□□□□ -2
GFRA1P56159 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC2.57□□□□□ -2
GFRA1P56159 MIR5094-201ENST00000578766 85 ntBASIC2.57□□□□□ -2
GFRA1P56159 AC097639.2-201ENST00000603159 172 ntBASIC2.57□□□□□ -2
GFRA1P56159 AC120024.3-201ENST00000603167 156 ntBASIC2.57□□□□□ -2
GFRA1P56159 AC022217.4-201ENST00000604389 163 ntBASIC2.57□□□□□ -2
GFRA1P56159 AC010332.2-201ENST00000613083 1904 ntBASIC2.57□□□□□ -2
GFRA1P56159 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
GFRA1P56159 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC2.57□□□□□ -2
GFRA1P56159 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
GFRA1P56159 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.56□□□□□ -2
GFRA1P56159 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.56□□□□□ -2
GFRA1P56159 Y_RNA.91-201ENST00000363042 107 ntBASIC2.56□□□□□ -2
GFRA1P56159 MIR802-201ENST00000390235 94 ntBASIC2.56□□□□□ -2
GFRA1P56159 HMGN2P39-201ENST00000398005 273 ntBASIC2.56□□□□□ -2
GFRA1P56159 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2.56□□□□□ -2
GFRA1P56159 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC2.56□□□□□ -2
GFRA1P56159 AC105272.1-201ENST00000438604 198 ntBASIC2.56□□□□□ -2
GFRA1P56159 RNU6-365P-201ENST00000517113 106 ntBASIC2.56□□□□□ -2
GFRA1P56159 AC090142.3-201ENST00000519012 385 ntBASIC2.56□□□□□ -2
GFRA1P56159 AC084364.2-201ENST00000546924 395 ntBASIC2.56□□□□□ -2
GFRA1P56159 ELOCP29-201ENST00000588193 334 ntBASIC2.56□□□□□ -2
GFRA1P56159 SCARNA15.3-201ENST00000626315 122 ntBASIC2.56□□□□□ -2
GFRA1P56159 SCARNA4.1-201ENST00000628597 123 ntBASIC2.56□□□□□ -2
GFRA1P56159 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC2.56□□□□□ -2
GFRA1P56159 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.55□□□□□ -2
GFRA1P56159 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.55□□□□□ -2
GFRA1P56159 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.55□□□□□ -2
GFRA1P56159 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
GFRA1P56159 SNORD68-201ENST00000363214 84 ntBASIC2.55□□□□□ -2
GFRA1P56159 RNU6-978P-201ENST00000364371 103 ntBASIC2.55□□□□□ -2
GFRA1P56159 Y_RNA.265-201ENST00000364677 108 ntBASIC2.55□□□□□ -2
GFRA1P56159 SNORA40-201ENST00000388090 126 ntBASIC2.55□□□□□ -2
GFRA1P56159 RNA5SP109-201ENST00000391010 116 ntBASIC2.55□□□□□ -2
GFRA1P56159 RNA5SP482-201ENST00000391269 118 ntBASIC2.55□□□□□ -2
GFRA1P56159 MIR1283-2-201ENST00000408621 87 ntBASIC2.55□□□□□ -2
GFRA1P56159 RNU6-588P-201ENST00000410281 105 ntBASIC2.55□□□□□ -2
GFRA1P56159 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC2.55□□□□□ -2
GFRA1P56159 AC087499.2-201ENST00000432861 149 ntBASIC2.55□□□□□ -2
GFRA1P56159 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC2.55□□□□□ -2
GFRA1P56159 MRPS17P9-201ENST00000511924 393 ntBASIC2.55□□□□□ -2
GFRA1P56159 RNA5SP272-201ENST00000516095 111 ntBASIC2.55□□□□□ -2
GFRA1P56159 RNU7-28P-201ENST00000516759 62 ntBASIC2.55□□□□□ -2
GFRA1P56159 GTF3AP2-201ENST00000557014 266 ntBASIC2.55□□□□□ -2
GFRA1P56159 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
GFRA1P56159 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC2.54□□□□□ -2
GFRA1P56159 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC2.54□□□□□ -2
GFRA1P56159 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
GFRA1P56159 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
GFRA1P56159 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC2.54□□□□□ -2
GFRA1P56159 U8.9-201ENST00000365667 134 ntBASIC2.54□□□□□ -2
GFRA1P56159 RNU1-109P-201ENST00000383960 147 ntBASIC2.54□□□□□ -2
GFRA1P56159 Y_RNA.486-201ENST00000384398 107 ntBASIC2.54□□□□□ -2
GFRA1P56159 MIR512-1-201ENST00000384913 84 ntBASIC2.54□□□□□ -2
GFRA1P56159 MIR522-201ENST00000385071 87 ntBASIC2.54□□□□□ -2
GFRA1P56159 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC2.54□□□□□ -2
GFRA1P56159 Y_RNA.586-201ENST00000391146 98 ntBASIC2.54□□□□□ -2
GFRA1P56159 RNU6-257P-201ENST00000410238 98 ntBASIC2.54□□□□□ -2
GFRA1P56159 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.54□□□□□ -2
GFRA1P56159 FTH1P12-201ENST00000432137 551 ntBASIC2.54□□□□□ -2
GFRA1P56159 HMGN2P3-201ENST00000433603 273 ntBASIC2.54□□□□□ -2
GFRA1P56159 HMGN2P5-201ENST00000436882 273 ntBASIC2.54□□□□□ -2
GFRA1P56159 AL606517.2-201ENST00000442855 241 ntBASIC2.54□□□□□ -2
GFRA1P56159 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.54□□□□□ -2
GFRA1P56159 RN7SKP132-201ENST00000516001 208 ntBASIC2.54□□□□□ -2
GFRA1P56159 AC008507.4-201ENST00000585464 127 ntBASIC2.54□□□□□ -2
GFRA1P56159 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC2.54□□□□□ -2
GFRA1P56159 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.54□□□□□ -2
GFRA1P56159 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC2.54□□□□□ -2
GFRA1P56159 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
GFRA1P56159 AL161431.1-201ENST00000618966 4205 ntBASIC2.53□□□□□ -2
GFRA1P56159 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.53□□□□□ -2
GFRA1P56159 Y_RNA.420-201ENST00000384043 110 ntBASIC2.53□□□□□ -2
GFRA1P56159 Y_RNA.510-201ENST00000384511 114 ntBASIC2.53□□□□□ -2
GFRA1P56159 RNA5SP344-201ENST00000411081 104 ntBASIC2.53□□□□□ -2
GFRA1P56159 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.53□□□□□ -2
GFRA1P56159 RNU6-504P-201ENST00000516568 104 ntBASIC2.53□□□□□ -2
GFRA1P56159 AC079600.2-201ENST00000550076 130 ntBASIC2.53□□□□□ -2
GFRA1P56159 AC091544.4-201ENST00000555268 342 ntBASIC2.53□□□□□ -2
GFRA1P56159 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC2.53□□□□□ -2
GFRA1P56159 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.52□□□□□ -2.01
GFRA1P56159 SNORA5B-201ENST00000363786 132 ntBASIC2.52□□□□□ -2.01
GFRA1P56159 RNU6-1117P-201ENST00000384525 104 ntBASIC2.52□□□□□ -2.01
GFRA1P56159 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC2.52□□□□□ -2.01
GFRA1P56159 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.52□□□□□ -2.01
GFRA1P56159 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC2.52□□□□□ -2.01
GFRA1P56159 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC2.52□□□□□ -2.01
GFRA1P56159 RNA5SP356-201ENST00000515972 94 ntBASIC2.52□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 106.6 ms