RNA–Protein interactions for RNA: ENST00000618972.4

NEB-220, Transcript of nebulin, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene NEB, Length 26,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEB-220ENST00000618972 MYT1Q01538 1121 aa5.49□□□□□ -1.53
NEB-220ENST00000618972 TTBK1Q5TCY1 1321 aaPredicted RBP5.28□□□□□ -1.56
NEB-220ENST00000618972 PPARGC1BQ86YN6 1023 aaKnown RBP5.28□□□□□ -1.56
NEB-220ENST00000618972 PELP1Q8IZL8 1130 aaKnown RBP5.28□□□□□ -1.56
NEB-220ENST00000618972 SUPT5HO00267 1087 aaKnown RBP5.28□□□□□ -1.56
NEB-220ENST00000618972 EHMT2Q96KQ7 1210 aa5.24□□□□□ -1.57
NEB-220ENST00000618972 DCAF8L2P0C7V8 631 aa5.24□□□□□ -1.57
NEB-220ENST00000618972 LOC105371045A0A1W2PR82 267 aa5.2□□□□□ -1.58
NEB-220ENST00000618972 PCGF6Q9BYE7 350 aa5.17□□□□□ -1.58
NEB-220ENST00000618972 SHROOM4Q9ULL8 1493 aa5.11□□□□□ -1.59
NEB-220ENST00000618972 FAM9AQ8IZU1 332 aaPredicted RBP5.03□□□□□ -1.6
NEB-220ENST00000618972 HRCP23327 699 aa5□□□□□ -1.61
NEB-220ENST00000618972 CHIC1Q5VXU3 224 aa4.95□□□□□ -1.62
NEB-220ENST00000618972 YTHDC1Q96MU7 727 aaKnown RBP4.9□□□□□ -1.63
NEB-220ENST00000618972 CCER1Q8TC90 406 aaPredicted RBP4.89□□□□□ -1.63
NEB-220ENST00000618972 ERICH6Q7L0X2 663 aa4.84□□□□□ -1.63
NEB-220ENST00000618972 SCAF1Q9H7N4 1312 aaKnown RBP4.84□□□□□ -1.64
NEB-220ENST00000618972 ZEB1P37275 1124 aaPredicted RBP4.81□□□□□ -1.64
NEB-220ENST00000618972 RANGAP1P46060 587 aaPredicted RBP4.79□□□□□ -1.64
NEB-220ENST00000618972 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP4.78□□□□□ -1.65
NEB-220ENST00000618972 NEUROD1Q13562 356 aa4.76□□□□□ -1.65
NEB-220ENST00000618972 CENPBP07199 599 aaPredicted RBP4.72□□□□□ -1.65
NEB-220ENST00000618972 TRIM26Q12899 539 aaPredicted RBP4.71□□□□□ -1.65
NEB-220ENST00000618972 GTF3C3Q9Y5Q9 886 aa4.71□□□□□ -1.66
NEB-220ENST00000618972 HNRNPUL2Q1KMD3 747 aaKnown RBP4.69□□□□□ -1.66
NEB-220ENST00000618972 MIER1Q8N108 512 aa4.67□□□□□ -1.66
NEB-220ENST00000618972 TRIM41Q8WV44 630 aa4.66□□□□□ -1.66
NEB-220ENST00000618972 ACIN1Q9UKV3 1341 aaKnown RBP4.63□□□□□ -1.67
NEB-220ENST00000618972 NISCHQ9Y2I1 1504 aa4.62□□□□□ -1.67
NEB-220ENST00000618972 SLC24A1O60721 1099 aa4.61□□□□□ -1.67
NEB-220ENST00000618972 DIEXFQ68CQ4 756 aaKnown RBP4.61□□□□□ -1.67
NEB-220ENST00000618972 BCANQ96GW7 911 aa4.61□□□□□ -1.67
NEB-220ENST00000618972 KCNH8Q96L42 1107 aa4.59□□□□□ -1.67
NEB-220ENST00000618972 SENP3-EIF4A1A0A087X0R7 540 aa4.59□□□□□ -1.68
NEB-220ENST00000618972 CNGB1Q14028 1251 aaPredicted RBP4.57□□□□□ -1.68
NEB-220ENST00000618972 MYT1LQ9UL68 1186 aa4.56□□□□□ -1.68
NEB-220ENST00000618972 HIRIP3Q9BW71 556 aaPredicted RBP4.55□□□□□ -1.68
NEB-220ENST00000618972 ITGAEP38570 1179 aa4.55□□□□□ -1.68
NEB-220ENST00000618972 UBTFP17480 764 aaKnown RBP4.54□□□□□ -1.68
NEB-220ENST00000618972 GLIPR1L2Q4G1C9 344 aa4.52□□□□□ -1.69
NEB-220ENST00000618972 DAXXQ9UER7 740 aaPredicted RBP4.51□□□□□ -1.69
NEB-220ENST00000618972 MYO15BQ96JP2 1530 aa4.5□□□□□ -1.69
NEB-220ENST00000618972 ZNF316A6NFI3 1004 aaPredicted RBP4.49□□□□□ -1.69
NEB-220ENST00000618972 IRX6P78412 446 aaPredicted RBP4.48□□□□□ -1.69
NEB-220ENST00000618972 ATP1B4Q9UN42 357 aaPredicted RBP4.47□□□□□ -1.69
NEB-220ENST00000618972 NEFLP07196 543 aa4.46□□□□□ -1.69
NEB-220ENST00000618972 APLP2Q06481 763 aa4.46□□□□□ -1.7
NEB-220ENST00000618972 CSRNP3Q8WYN3 585 aa4.45□□□□□ -1.7
NEB-220ENST00000618972 DDX10Q13206 875 aaKnown RBP4.45□□□□□ -1.7
NEB-220ENST00000618972 PABPN1Q86U42 306 aaKnown RBP eCLIP4.45□□□□□ -1.7
NEB-220ENST00000618972 TSHZ2Q9NRE2 1034 aa4.44□□□□□ -1.7
NEB-220ENST00000618972 CLSPNQ9HAW4 1339 aa4.44□□□□□ -1.7
NEB-220ENST00000618972 FKBP8Q14318 412 aa4.43□□□□□ -1.7
NEB-220ENST00000618972 P3H3Q8IVL6 736 aa4.42□□□□□ -1.7
NEB-220ENST00000618972 SIN3AQ96ST3 1273 aa4.41□□□□□ -1.7
NEB-220ENST00000618972 NCLP19338 710 aaKnown RBP4.39□□□□□ -1.71
NEB-220ENST00000618972 ANP32EQ9BTT0 268 aa4.37□□□□□ -1.71
NEB-220ENST00000618972 TRIM52Q96A61 297 aa4.36□□□□□ -1.71
NEB-220ENST00000618972 CDK11AQ9UQ88 783 aaPredicted RBP4.36□□□□□ -1.71
NEB-220ENST00000618972 SUPT16HQ9Y5B9 1047 aaKnown RBP4.36□□□□□ -1.71
NEB-220ENST00000618972 ARID3CA6NKF2 412 aa4.35□□□□□ -1.71
NEB-220ENST00000618972 BCL11AQ9H165 835 aa4.35□□□□□ -1.71
NEB-220ENST00000618972 KANK4Q5T7N3 995 aaPredicted RBP4.35□□□□□ -1.71
NEB-220ENST00000618972 MSH5O43196 834 aa4.35□□□□□ -1.71
NEB-220ENST00000618972 POLR3GLQ9BT43 218 aa4.35□□□□□ -1.71
NEB-220ENST00000618972 RTL5Q5HYW3 569 aaPredicted RBP4.34□□□□□ -1.71
NEB-220ENST00000618972 RBM19Q9Y4C8 960 aaKnown RBP4.33□□□□□ -1.72
NEB-220ENST00000618972 SALL2Q9Y467 1007 aaPredicted RBP4.33□□□□□ -1.72
NEB-220ENST00000618972 TNNT2P45379 298 aaPredicted RBP4.31□□□□□ -1.72
NEB-220ENST00000618972 CCDC184Q52MB2 194 aa4.31□□□□□ -1.72
NEB-220ENST00000618972 EIF5BO60841 1220 aaKnown RBP4.3□□□□□ -1.72
NEB-220ENST00000618972 ANO8Q9HCE9 1232 aaPredicted RBP4.3□□□□□ -1.72
NEB-220ENST00000618972 FAM50AQ14320 339 aaKnown RBP4.3□□□□□ -1.72
NEB-220ENST00000618972 PRKCSHP14314 528 aaPredicted RBP4.3□□□□□ -1.72
NEB-220ENST00000618972 C11orf95C9JLR9 678 aaPredicted RBP4.3□□□□□ -1.72
NEB-220ENST00000618972 RTN4Q9NQC3 1192 aaKnown RBP4.29□□□□□ -1.72
NEB-220ENST00000618972 ARXQ96QS3 562 aa4.29□□□□□ -1.72
NEB-220ENST00000618972 NBR1Q14596 966 aa4.28□□□□□ -1.72
NEB-220ENST00000618972 B4GALNT3Q6L9W6 998 aa4.28□□□□□ -1.72
NEB-220ENST00000618972 ANP32BQ92688 251 aaKnown RBP4.28□□□□□ -1.72
NEB-220ENST00000618972 CCDC136Q96JN2 1154 aa4.28□□□□□ -1.72
NEB-220ENST00000618972 HMGB1P09429 215 aaKnown RBP4.28□□□□□ -1.72
NEB-220ENST00000618972 ARID4BQ4LE39 1312 aaPredicted RBP4.27□□□□□ -1.73
NEB-220ENST00000618972 SKAP1Q86WV1 359 aa4.26□□□□□ -1.73
NEB-220ENST00000618972 PAK3O75914 559 aaPredicted RBP4.26□□□□□ -1.73
NEB-220ENST00000618972 FOXD1Q16676 465 aa4.26□□□□□ -1.73
NEB-220ENST00000618972 TRIM44Q96DX7 344 aaPredicted RBP4.26□□□□□ -1.73
NEB-220ENST00000618972 CHIC2Q9UKJ5 165 aa4.26□□□□□ -1.73
NEB-220ENST00000618972 SLC4A3P48751 1232 aa4.25□□□□□ -1.73
NEB-220ENST00000618972 FAM9BQ8IZU0 186 aa4.25□□□□□ -1.73
NEB-220ENST00000618972 PTMSP20962 102 aa4.24□□□□□ -1.73
NEB-220ENST00000618972 ERICH6BQ5W0A0 696 aa4.24□□□□□ -1.73
NEB-220ENST00000618972 BAZ1BQ9UIG0 1483 aaKnown RBP4.24□□□□□ -1.73
NEB-220ENST00000618972 ZNF326Q5BKZ1 582 aaKnown RBP4.23□□□□□ -1.73
NEB-220ENST00000618972 SENP3Q9H4L4 574 aaPredicted RBP4.23□□□□□ -1.73
NEB-220ENST00000618972 NPM2Q86SE8 214 aaKnown RBP4.23□□□□□ -1.73
NEB-220ENST00000618972 AMER1Q5JTC6 1135 aaPredicted RBP4.22□□□□□ -1.73
NEB-220ENST00000618972 DEKP35659 375 aaKnown RBP4.21□□□□□ -1.73
NEB-220ENST00000618972 KDM2AQ9Y2K7 1162 aa4.21□□□□□ -1.73
NEB-220ENST00000618972 PPP1R15AO75807 674 aaPredicted RBP4.21□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 273.3 ms