Protein–RNA interactions for Protein: Q9Y5X1

SNX9, Sorting nexin-9, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9Q9Y5X1 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SNX9Q9Y5X1 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SNX9Q9Y5X1 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SNX9Q9Y5X1 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SNX9Q9Y5X1 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SNX9Q9Y5X1 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SNX9Q9Y5X1 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
SNX9Q9Y5X1 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SNX9Q9Y5X1 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
SNX9Q9Y5X1 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC20.24■□□□□ 0.83
SNX9Q9Y5X1 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC20.24■□□□□ 0.83
SNX9Q9Y5X1 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SNX9Q9Y5X1 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SNX9Q9Y5X1 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SNX9Q9Y5X1 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
SNX9Q9Y5X1 AL161938.1-201ENST00000569833 2180 ntBASIC20.24■□□□□ 0.83
SNX9Q9Y5X1 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
SNX9Q9Y5X1 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC20.24■□□□□ 0.83
SNX9Q9Y5X1 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC20.24■□□□□ 0.83
SNX9Q9Y5X1 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
SNX9Q9Y5X1 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
SNX9Q9Y5X1 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SNX9Q9Y5X1 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC20.24■□□□□ 0.83
SNX9Q9Y5X1 CFL2-205ENST00000555765 632 ntTSL 2 BASIC20.24■□□□□ 0.83
SNX9Q9Y5X1 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SNX9Q9Y5X1 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SNX9Q9Y5X1 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC20.24■□□□□ 0.83
SNX9Q9Y5X1 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
SNX9Q9Y5X1 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC20.24■□□□□ 0.83
SNX9Q9Y5X1 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC20.23■□□□□ 0.83
SNX9Q9Y5X1 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC20.23■□□□□ 0.83
SNX9Q9Y5X1 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC20.23■□□□□ 0.83
SNX9Q9Y5X1 GPAT2P1-201ENST00000444924 1672 ntBASIC20.23■□□□□ 0.83
SNX9Q9Y5X1 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SNX9Q9Y5X1 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC20.23■□□□□ 0.83
SNX9Q9Y5X1 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC20.23■□□□□ 0.83
SNX9Q9Y5X1 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC20.23■□□□□ 0.83
SNX9Q9Y5X1 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SNX9Q9Y5X1 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SNX9Q9Y5X1 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SNX9Q9Y5X1 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SNX9Q9Y5X1 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SNX9Q9Y5X1 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC20.23■□□□□ 0.83
SNX9Q9Y5X1 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC20.23■□□□□ 0.83
SNX9Q9Y5X1 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
SNX9Q9Y5X1 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
SNX9Q9Y5X1 KRT8P45-201ENST00000414328 1447 ntBASIC20.23■□□□□ 0.83
SNX9Q9Y5X1 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC20.23■□□□□ 0.83
SNX9Q9Y5X1 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SNX9Q9Y5X1 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC20.23■□□□□ 0.83
SNX9Q9Y5X1 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC20.23■□□□□ 0.83
SNX9Q9Y5X1 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
SNX9Q9Y5X1 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC20.23■□□□□ 0.83
SNX9Q9Y5X1 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC20.23■□□□□ 0.83
SNX9Q9Y5X1 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SNX9Q9Y5X1 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC20.23■□□□□ 0.83
SNX9Q9Y5X1 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC20.23■□□□□ 0.83
SNX9Q9Y5X1 LGALS8-AS1-201ENST00000487567 1457 ntBASIC20.23■□□□□ 0.83
SNX9Q9Y5X1 KATNBL1P6-202ENST00000562413 1466 ntBASIC20.23■□□□□ 0.83
SNX9Q9Y5X1 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC20.23■□□□□ 0.83
SNX9Q9Y5X1 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
SNX9Q9Y5X1 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SNX9Q9Y5X1 AL049812.1-201ENST00000432563 2267 ntBASIC20.23■□□□□ 0.83
SNX9Q9Y5X1 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC20.23■□□□□ 0.83
SNX9Q9Y5X1 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC20.23■□□□□ 0.83
SNX9Q9Y5X1 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SNX9Q9Y5X1 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
SNX9Q9Y5X1 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC20.22■□□□□ 0.83
SNX9Q9Y5X1 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
SNX9Q9Y5X1 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
SNX9Q9Y5X1 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SNX9Q9Y5X1 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SNX9Q9Y5X1 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
SNX9Q9Y5X1 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SNX9Q9Y5X1 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
SNX9Q9Y5X1 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SNX9Q9Y5X1 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SNX9Q9Y5X1 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SNX9Q9Y5X1 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SNX9Q9Y5X1 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC20.22■□□□□ 0.83
SNX9Q9Y5X1 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SNX9Q9Y5X1 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SNX9Q9Y5X1 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
SNX9Q9Y5X1 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
SNX9Q9Y5X1 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
SNX9Q9Y5X1 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SNX9Q9Y5X1 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
SNX9Q9Y5X1 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SNX9Q9Y5X1 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC20.22■□□□□ 0.83
SNX9Q9Y5X1 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC20.22■□□□□ 0.83
SNX9Q9Y5X1 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC20.22■□□□□ 0.83
SNX9Q9Y5X1 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
SNX9Q9Y5X1 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
SNX9Q9Y5X1 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
SNX9Q9Y5X1 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SNX9Q9Y5X1 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SNX9Q9Y5X1 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
SNX9Q9Y5X1 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC20.21■□□□□ 0.83
SNX9Q9Y5X1 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC20.21■□□□□ 0.83
SNX9Q9Y5X1 AL138966.2-201ENST00000621997 464 ntBASIC20.21■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms