Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VSX1Q9NZR4 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC16.91■□□□□ 0.3
VSX1Q9NZR4 AL353708.3-201ENST00000610272 989 ntBASIC16.91■□□□□ 0.3
VSX1Q9NZR4 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
VSX1Q9NZR4 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VSX1Q9NZR4 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VSX1Q9NZR4 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
VSX1Q9NZR4 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VSX1Q9NZR4 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VSX1Q9NZR4 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VSX1Q9NZR4 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VSX1Q9NZR4 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC16.91■□□□□ 0.3
VSX1Q9NZR4 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC16.91■□□□□ 0.3
VSX1Q9NZR4 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC16.91■□□□□ 0.3
VSX1Q9NZR4 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VSX1Q9NZR4 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VSX1Q9NZR4 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
VSX1Q9NZR4 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VSX1Q9NZR4 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VSX1Q9NZR4 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VSX1Q9NZR4 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
VSX1Q9NZR4 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VSX1Q9NZR4 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VSX1Q9NZR4 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VSX1Q9NZR4 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC16.9■□□□□ 0.3
VSX1Q9NZR4 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
VSX1Q9NZR4 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
VSX1Q9NZR4 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VSX1Q9NZR4 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VSX1Q9NZR4 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VSX1Q9NZR4 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
VSX1Q9NZR4 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VSX1Q9NZR4 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
VSX1Q9NZR4 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC16.9■□□□□ 0.3
VSX1Q9NZR4 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
VSX1Q9NZR4 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC16.9■□□□□ 0.3
VSX1Q9NZR4 AC131212.4-201ENST00000623606 975 ntBASIC16.9■□□□□ 0.3
VSX1Q9NZR4 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC16.9■□□□□ 0.3
VSX1Q9NZR4 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VSX1Q9NZR4 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VSX1Q9NZR4 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VSX1Q9NZR4 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VSX1Q9NZR4 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VSX1Q9NZR4 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
VSX1Q9NZR4 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
VSX1Q9NZR4 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
VSX1Q9NZR4 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VSX1Q9NZR4 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC16.9■□□□□ 0.3
VSX1Q9NZR4 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC16.9■□□□□ 0.3
VSX1Q9NZR4 AC090340.1-201ENST00000620778 4980 ntBASIC16.9■□□□□ 0.3
VSX1Q9NZR4 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VSX1Q9NZR4 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
VSX1Q9NZR4 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
VSX1Q9NZR4 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC16.89■□□□□ 0.3
VSX1Q9NZR4 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
VSX1Q9NZR4 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
VSX1Q9NZR4 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC16.89■□□□□ 0.3
VSX1Q9NZR4 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
VSX1Q9NZR4 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC16.89■□□□□ 0.3
VSX1Q9NZR4 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC16.89■□□□□ 0.29
VSX1Q9NZR4 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
VSX1Q9NZR4 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC16.89■□□□□ 0.29
VSX1Q9NZR4 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
VSX1Q9NZR4 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC16.89■□□□□ 0.29
VSX1Q9NZR4 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
VSX1Q9NZR4 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC16.89■□□□□ 0.29
VSX1Q9NZR4 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
VSX1Q9NZR4 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
VSX1Q9NZR4 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
VSX1Q9NZR4 AC004980.1-204ENST00000429707 299 ntBASIC16.89■□□□□ 0.29
VSX1Q9NZR4 AC128676.1-201ENST00000454392 318 ntBASIC16.89■□□□□ 0.29
VSX1Q9NZR4 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC16.89■□□□□ 0.29
VSX1Q9NZR4 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC16.89■□□□□ 0.29
VSX1Q9NZR4 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC16.89■□□□□ 0.29
VSX1Q9NZR4 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC16.89■□□□□ 0.29
VSX1Q9NZR4 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC16.89■□□□□ 0.29
VSX1Q9NZR4 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC16.89■□□□□ 0.29
VSX1Q9NZR4 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC16.89■□□□□ 0.29
VSX1Q9NZR4 CABP2-204ENST00000636477 941 ntTSL 5 BASIC16.89■□□□□ 0.29
VSX1Q9NZR4 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
VSX1Q9NZR4 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC16.89■□□□□ 0.29
VSX1Q9NZR4 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
VSX1Q9NZR4 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VSX1Q9NZR4 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VSX1Q9NZR4 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
VSX1Q9NZR4 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC16.89■□□□□ 0.29
VSX1Q9NZR4 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
VSX1Q9NZR4 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC16.89■□□□□ 0.29
VSX1Q9NZR4 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VSX1Q9NZR4 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VSX1Q9NZR4 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC16.89■□□□□ 0.29
VSX1Q9NZR4 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VSX1Q9NZR4 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC16.89■□□□□ 0.29
VSX1Q9NZR4 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VSX1Q9NZR4 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
VSX1Q9NZR4 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VSX1Q9NZR4 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VSX1Q9NZR4 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
VSX1Q9NZR4 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC16.88■□□□□ 0.29
VSX1Q9NZR4 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms