Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
SMARCAL1Q9NZC9 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SMARCAL1Q9NZC9 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC19.93■□□□□ 0.78
SMARCAL1Q9NZC9 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
SMARCAL1Q9NZC9 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
SMARCAL1Q9NZC9 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
SMARCAL1Q9NZC9 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SMARCAL1Q9NZC9 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SMARCAL1Q9NZC9 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
SMARCAL1Q9NZC9 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SMARCAL1Q9NZC9 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
SMARCAL1Q9NZC9 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC19.93■□□□□ 0.78
SMARCAL1Q9NZC9 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
SMARCAL1Q9NZC9 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SMARCAL1Q9NZC9 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SMARCAL1Q9NZC9 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SMARCAL1Q9NZC9 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SMARCAL1Q9NZC9 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
SMARCAL1Q9NZC9 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SMARCAL1Q9NZC9 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SMARCAL1Q9NZC9 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC19.93■□□□□ 0.78
SMARCAL1Q9NZC9 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
SMARCAL1Q9NZC9 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC19.93■□□□□ 0.78
SMARCAL1Q9NZC9 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
SMARCAL1Q9NZC9 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC19.93■□□□□ 0.78
SMARCAL1Q9NZC9 KRT18P16-201ENST00000510337 1294 ntBASIC19.93■□□□□ 0.78
SMARCAL1Q9NZC9 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC19.93■□□□□ 0.78
SMARCAL1Q9NZC9 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC19.93■□□□□ 0.78
SMARCAL1Q9NZC9 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC19.93■□□□□ 0.78
SMARCAL1Q9NZC9 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC19.93■□□□□ 0.78
SMARCAL1Q9NZC9 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC19.93■□□□□ 0.78
SMARCAL1Q9NZC9 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SMARCAL1Q9NZC9 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SMARCAL1Q9NZC9 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC19.93■□□□□ 0.78
SMARCAL1Q9NZC9 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC19.93■□□□□ 0.78
SMARCAL1Q9NZC9 SNAI3-AS1-205ENST00000568633 2096 ntBASIC19.93■□□□□ 0.78
SMARCAL1Q9NZC9 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
SMARCAL1Q9NZC9 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SMARCAL1Q9NZC9 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SMARCAL1Q9NZC9 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC19.92■□□□□ 0.78
SMARCAL1Q9NZC9 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC19.92■□□□□ 0.78
SMARCAL1Q9NZC9 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC19.92■□□□□ 0.78
SMARCAL1Q9NZC9 ID1-201ENST00000376105 1233 ntBASIC19.92■□□□□ 0.78
SMARCAL1Q9NZC9 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC19.92■□□□□ 0.78
SMARCAL1Q9NZC9 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SMARCAL1Q9NZC9 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC19.92■□□□□ 0.78
SMARCAL1Q9NZC9 AC091874.3-201ENST00000512672 1195 ntBASIC19.92■□□□□ 0.78
SMARCAL1Q9NZC9 BET1L-207ENST00000529614 560 ntTSL 5 BASIC19.92■□□□□ 0.78
SMARCAL1Q9NZC9 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC19.92■□□□□ 0.78
SMARCAL1Q9NZC9 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SMARCAL1Q9NZC9 AC098934.4-201ENST00000564127 592 ntBASIC19.92■□□□□ 0.78
SMARCAL1Q9NZC9 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC19.92■□□□□ 0.78
SMARCAL1Q9NZC9 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
SMARCAL1Q9NZC9 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SMARCAL1Q9NZC9 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
SMARCAL1Q9NZC9 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SMARCAL1Q9NZC9 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC19.91■□□□□ 0.78
SMARCAL1Q9NZC9 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SMARCAL1Q9NZC9 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC19.91■□□□□ 0.78
SMARCAL1Q9NZC9 AL499627.1-201ENST00000569373 2188 ntBASIC19.91■□□□□ 0.78
SMARCAL1Q9NZC9 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SMARCAL1Q9NZC9 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC19.91■□□□□ 0.78
SMARCAL1Q9NZC9 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC19.91■□□□□ 0.78
SMARCAL1Q9NZC9 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
SMARCAL1Q9NZC9 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SMARCAL1Q9NZC9 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SMARCAL1Q9NZC9 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC19.91■□□□□ 0.78
SMARCAL1Q9NZC9 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SMARCAL1Q9NZC9 GOLGA6L5P-202ENST00000515341 1828 ntBASIC19.91■□□□□ 0.78
SMARCAL1Q9NZC9 AL355802.2-201ENST00000402069 882 ntBASIC19.91■□□□□ 0.78
SMARCAL1Q9NZC9 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
SMARCAL1Q9NZC9 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC19.91■□□□□ 0.78
SMARCAL1Q9NZC9 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SMARCAL1Q9NZC9 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SMARCAL1Q9NZC9 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC19.91■□□□□ 0.78
SMARCAL1Q9NZC9 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC19.91■□□□□ 0.78
SMARCAL1Q9NZC9 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
SMARCAL1Q9NZC9 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
SMARCAL1Q9NZC9 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SMARCAL1Q9NZC9 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
SMARCAL1Q9NZC9 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC19.91■□□□□ 0.78
SMARCAL1Q9NZC9 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC19.91■□□□□ 0.78
SMARCAL1Q9NZC9 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
SMARCAL1Q9NZC9 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
SMARCAL1Q9NZC9 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SMARCAL1Q9NZC9 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SMARCAL1Q9NZC9 PODN-203ENST00000395871 2744 ntTSL 5 BASIC19.9■□□□□ 0.78
SMARCAL1Q9NZC9 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SMARCAL1Q9NZC9 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
SMARCAL1Q9NZC9 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SMARCAL1Q9NZC9 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SMARCAL1Q9NZC9 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
SMARCAL1Q9NZC9 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SMARCAL1Q9NZC9 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC19.9■□□□□ 0.78
SMARCAL1Q9NZC9 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SMARCAL1Q9NZC9 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC19.9■□□□□ 0.78
SMARCAL1Q9NZC9 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SMARCAL1Q9NZC9 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SMARCAL1Q9NZC9 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SMARCAL1Q9NZC9 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC19.9■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms