Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC17.92■□□□□ 0.46
SCN3AQ9NY46 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SCN3AQ9NY46 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC17.92■□□□□ 0.46
SCN3AQ9NY46 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC17.92■□□□□ 0.46
SCN3AQ9NY46 MTMR9LP-203ENST00000426597 1545 ntBASIC17.92■□□□□ 0.46
SCN3AQ9NY46 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SCN3AQ9NY46 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SCN3AQ9NY46 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
SCN3AQ9NY46 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SCN3AQ9NY46 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
SCN3AQ9NY46 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SCN3AQ9NY46 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SCN3AQ9NY46 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SCN3AQ9NY46 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SCN3AQ9NY46 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SCN3AQ9NY46 AC005521.1-201ENST00000393351 872 ntBASIC17.91■□□□□ 0.46
SCN3AQ9NY46 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC17.91■□□□□ 0.46
SCN3AQ9NY46 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC17.91■□□□□ 0.46
SCN3AQ9NY46 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC17.91■□□□□ 0.46
SCN3AQ9NY46 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
SCN3AQ9NY46 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC17.91■□□□□ 0.46
SCN3AQ9NY46 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC17.91■□□□□ 0.46
SCN3AQ9NY46 AL023803.3-201ENST00000615559 522 ntBASIC17.91■□□□□ 0.46
SCN3AQ9NY46 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SCN3AQ9NY46 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SCN3AQ9NY46 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
SCN3AQ9NY46 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
SCN3AQ9NY46 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SCN3AQ9NY46 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC17.91■□□□□ 0.46
SCN3AQ9NY46 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SCN3AQ9NY46 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SCN3AQ9NY46 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SCN3AQ9NY46 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC17.91■□□□□ 0.46
SCN3AQ9NY46 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SCN3AQ9NY46 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
SCN3AQ9NY46 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC17.91■□□□□ 0.46
SCN3AQ9NY46 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
SCN3AQ9NY46 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
SCN3AQ9NY46 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC17.91■□□□□ 0.46
SCN3AQ9NY46 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
SCN3AQ9NY46 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC17.91■□□□□ 0.46
SCN3AQ9NY46 ANKRD20A18P-201ENST00000359341 492 ntBASIC17.91■□□□□ 0.46
SCN3AQ9NY46 HMGA1P5-201ENST00000412453 271 ntBASIC17.91■□□□□ 0.46
SCN3AQ9NY46 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC17.91■□□□□ 0.46
SCN3AQ9NY46 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SCN3AQ9NY46 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC17.91■□□□□ 0.46
SCN3AQ9NY46 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC17.9■□□□□ 0.46
SCN3AQ9NY46 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SCN3AQ9NY46 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
SCN3AQ9NY46 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
SCN3AQ9NY46 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC17.9■□□□□ 0.46
SCN3AQ9NY46 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SCN3AQ9NY46 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
SCN3AQ9NY46 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
SCN3AQ9NY46 TSPY14P-201ENST00000303979 915 ntBASIC17.9■□□□□ 0.46
SCN3AQ9NY46 RCN1P1-201ENST00000400413 996 ntBASIC17.9■□□□□ 0.46
SCN3AQ9NY46 TMA16-209ENST00000513272 803 ntTSL 2 BASIC17.9■□□□□ 0.46
SCN3AQ9NY46 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC17.9■□□□□ 0.46
SCN3AQ9NY46 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
SCN3AQ9NY46 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC17.9■□□□□ 0.46
SCN3AQ9NY46 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC17.9■□□□□ 0.46
SCN3AQ9NY46 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
SCN3AQ9NY46 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
SCN3AQ9NY46 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
SCN3AQ9NY46 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SCN3AQ9NY46 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC17.9■□□□□ 0.46
SCN3AQ9NY46 HEIH-201ENST00000623091 1652 ntBASIC17.9■□□□□ 0.46
SCN3AQ9NY46 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SCN3AQ9NY46 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SCN3AQ9NY46 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC17.9■□□□□ 0.46
SCN3AQ9NY46 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
SCN3AQ9NY46 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SCN3AQ9NY46 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.46
SCN3AQ9NY46 CCR12P-201ENST00000446203 998 ntBASIC17.89■□□□□ 0.46
SCN3AQ9NY46 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC17.89■□□□□ 0.46
SCN3AQ9NY46 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SCN3AQ9NY46 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC17.89■□□□□ 0.45
SCN3AQ9NY46 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SCN3AQ9NY46 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SCN3AQ9NY46 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
SCN3AQ9NY46 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SCN3AQ9NY46 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SCN3AQ9NY46 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC17.89■□□□□ 0.45
SCN3AQ9NY46 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC17.89■□□□□ 0.45
SCN3AQ9NY46 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SCN3AQ9NY46 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC17.89■□□□□ 0.45
SCN3AQ9NY46 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
SCN3AQ9NY46 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC17.89■□□□□ 0.45
SCN3AQ9NY46 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC17.89■□□□□ 0.45
SCN3AQ9NY46 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SCN3AQ9NY46 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC17.89■□□□□ 0.45
SCN3AQ9NY46 AL353719.1-201ENST00000566847 864 ntBASIC17.89■□□□□ 0.45
SCN3AQ9NY46 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC17.89■□□□□ 0.45
SCN3AQ9NY46 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC17.89■□□□□ 0.45
SCN3AQ9NY46 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC17.89■□□□□ 0.45
SCN3AQ9NY46 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC17.89■□□□□ 0.45
SCN3AQ9NY46 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC17.89■□□□□ 0.45
SCN3AQ9NY46 GPAT2P1-201ENST00000444924 1672 ntBASIC17.89■□□□□ 0.45
SCN3AQ9NY46 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC17.89■□□□□ 0.45
SCN3AQ9NY46 USP39-202ENST00000409025 1946 ntTSL 5 BASIC17.89■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms