Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC18.71■□□□□ 0.59
MKS1Q9NXB0 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC18.71■□□□□ 0.59
MKS1Q9NXB0 AC083906.2-201ENST00000511578 360 ntBASIC18.71■□□□□ 0.59
MKS1Q9NXB0 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
MKS1Q9NXB0 AC008687.6-201ENST00000596318 630 ntBASIC18.71■□□□□ 0.59
MKS1Q9NXB0 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
MKS1Q9NXB0 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC18.71■□□□□ 0.59
MKS1Q9NXB0 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
MKS1Q9NXB0 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
MKS1Q9NXB0 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC18.71■□□□□ 0.59
MKS1Q9NXB0 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
MKS1Q9NXB0 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC18.71■□□□□ 0.59
MKS1Q9NXB0 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
MKS1Q9NXB0 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
MKS1Q9NXB0 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
MKS1Q9NXB0 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC18.7■□□□□ 0.58
MKS1Q9NXB0 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
MKS1Q9NXB0 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
MKS1Q9NXB0 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
MKS1Q9NXB0 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC18.7■□□□□ 0.58
MKS1Q9NXB0 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
MKS1Q9NXB0 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
MKS1Q9NXB0 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
MKS1Q9NXB0 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
MKS1Q9NXB0 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC18.7■□□□□ 0.58
MKS1Q9NXB0 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC18.7■□□□□ 0.58
MKS1Q9NXB0 AC097658.1-201ENST00000475555 843 ntBASIC18.7■□□□□ 0.58
MKS1Q9NXB0 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC18.7■□□□□ 0.58
MKS1Q9NXB0 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
MKS1Q9NXB0 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
MKS1Q9NXB0 SOX15-203ENST00000570788 1093 ntBASIC18.7■□□□□ 0.58
MKS1Q9NXB0 MIR4758-201ENST00000577688 71 ntBASIC18.7■□□□□ 0.58
MKS1Q9NXB0 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
MKS1Q9NXB0 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
MKS1Q9NXB0 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
MKS1Q9NXB0 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
MKS1Q9NXB0 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
MKS1Q9NXB0 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
MKS1Q9NXB0 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
MKS1Q9NXB0 KATNBL1P6-202ENST00000562413 1466 ntBASIC18.7■□□□□ 0.58
MKS1Q9NXB0 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
MKS1Q9NXB0 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC18.7■□□□□ 0.58
MKS1Q9NXB0 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC18.69■□□□□ 0.58
MKS1Q9NXB0 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
MKS1Q9NXB0 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
MKS1Q9NXB0 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
MKS1Q9NXB0 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
MKS1Q9NXB0 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC18.69■□□□□ 0.58
MKS1Q9NXB0 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC18.69■□□□□ 0.58
MKS1Q9NXB0 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
MKS1Q9NXB0 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC18.69■□□□□ 0.58
MKS1Q9NXB0 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
MKS1Q9NXB0 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
MKS1Q9NXB0 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
MKS1Q9NXB0 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC18.69■□□□□ 0.58
MKS1Q9NXB0 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
MKS1Q9NXB0 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
MKS1Q9NXB0 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
MKS1Q9NXB0 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
MKS1Q9NXB0 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
MKS1Q9NXB0 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC18.69■□□□□ 0.58
MKS1Q9NXB0 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
MKS1Q9NXB0 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
MKS1Q9NXB0 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC18.69■□□□□ 0.58
MKS1Q9NXB0 SLC25A6P5-201ENST00000435663 894 ntBASIC18.69■□□□□ 0.58
MKS1Q9NXB0 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC18.69■□□□□ 0.58
MKS1Q9NXB0 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC18.69■□□□□ 0.58
MKS1Q9NXB0 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC18.69■□□□□ 0.58
MKS1Q9NXB0 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC18.69■□□□□ 0.58
MKS1Q9NXB0 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC18.69■□□□□ 0.58
MKS1Q9NXB0 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC18.69■□□□□ 0.58
MKS1Q9NXB0 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC18.69■□□□□ 0.58
MKS1Q9NXB0 MYC-208ENST00000641036 567 ntBASIC18.69■□□□□ 0.58
MKS1Q9NXB0 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC18.69■□□□□ 0.58
MKS1Q9NXB0 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
MKS1Q9NXB0 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC18.69■□□□□ 0.58
MKS1Q9NXB0 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
MKS1Q9NXB0 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
MKS1Q9NXB0 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
MKS1Q9NXB0 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
MKS1Q9NXB0 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC18.68■□□□□ 0.58
MKS1Q9NXB0 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC18.68■□□□□ 0.58
MKS1Q9NXB0 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC18.68■□□□□ 0.58
MKS1Q9NXB0 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
MKS1Q9NXB0 AL499627.1-201ENST00000569373 2188 ntBASIC18.68■□□□□ 0.58
MKS1Q9NXB0 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
MKS1Q9NXB0 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
MKS1Q9NXB0 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
MKS1Q9NXB0 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
MKS1Q9NXB0 GLRB-205ENST00000512619 728 ntTSL 3 BASIC18.68■□□□□ 0.58
MKS1Q9NXB0 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC18.68■□□□□ 0.58
MKS1Q9NXB0 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC18.68■□□□□ 0.58
MKS1Q9NXB0 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC18.68■□□□□ 0.58
MKS1Q9NXB0 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
MKS1Q9NXB0 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
MKS1Q9NXB0 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
MKS1Q9NXB0 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
MKS1Q9NXB0 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
MKS1Q9NXB0 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC18.68■□□□□ 0.58
MKS1Q9NXB0 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms