Protein–RNA interactions for Protein: Q9BSE4

HERPUD2, Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD2Q9BSE4 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC19.64■□□□□ 0.73
HERPUD2Q9BSE4 AL354751.1-201ENST00000412768 1863 ntBASIC19.64■□□□□ 0.73
HERPUD2Q9BSE4 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC19.64■□□□□ 0.73
HERPUD2Q9BSE4 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC19.64■□□□□ 0.73
HERPUD2Q9BSE4 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HERPUD2Q9BSE4 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC19.64■□□□□ 0.73
HERPUD2Q9BSE4 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HERPUD2Q9BSE4 AC018470.1-201ENST00000624790 3129 ntBASIC19.64■□□□□ 0.73
HERPUD2Q9BSE4 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC19.64■□□□□ 0.73
HERPUD2Q9BSE4 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC19.64■□□□□ 0.73
HERPUD2Q9BSE4 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HERPUD2Q9BSE4 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HERPUD2Q9BSE4 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
HERPUD2Q9BSE4 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HERPUD2Q9BSE4 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC19.63■□□□□ 0.73
HERPUD2Q9BSE4 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HERPUD2Q9BSE4 MTMR9LP-203ENST00000426597 1545 ntBASIC19.63■□□□□ 0.73
HERPUD2Q9BSE4 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HERPUD2Q9BSE4 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HERPUD2Q9BSE4 BAALC-201ENST00000297574 801 ntTSL 3 BASIC19.63■□□□□ 0.73
HERPUD2Q9BSE4 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
HERPUD2Q9BSE4 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HERPUD2Q9BSE4 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC19.63■□□□□ 0.73
HERPUD2Q9BSE4 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC19.63■□□□□ 0.73
HERPUD2Q9BSE4 RPS2P4-201ENST00000476944 856 ntBASIC19.63■□□□□ 0.73
HERPUD2Q9BSE4 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC19.63■□□□□ 0.73
HERPUD2Q9BSE4 RNF121-214ENST00000533380 870 ntTSL 3 BASIC19.63■□□□□ 0.73
HERPUD2Q9BSE4 AL445675.2-201ENST00000620291 557 ntBASIC19.63■□□□□ 0.73
HERPUD2Q9BSE4 ABBA01031674.1-201ENST00000635145 728 ntBASIC19.63■□□□□ 0.73
HERPUD2Q9BSE4 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
HERPUD2Q9BSE4 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HERPUD2Q9BSE4 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC19.63■□□□□ 0.73
HERPUD2Q9BSE4 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HERPUD2Q9BSE4 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
HERPUD2Q9BSE4 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HERPUD2Q9BSE4 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HERPUD2Q9BSE4 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC19.62■□□□□ 0.73
HERPUD2Q9BSE4 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC19.62■□□□□ 0.73
HERPUD2Q9BSE4 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HERPUD2Q9BSE4 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HERPUD2Q9BSE4 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HERPUD2Q9BSE4 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
HERPUD2Q9BSE4 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HERPUD2Q9BSE4 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC19.62■□□□□ 0.73
HERPUD2Q9BSE4 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HERPUD2Q9BSE4 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HERPUD2Q9BSE4 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
HERPUD2Q9BSE4 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC19.62■□□□□ 0.73
HERPUD2Q9BSE4 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HERPUD2Q9BSE4 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HERPUD2Q9BSE4 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC19.62■□□□□ 0.73
HERPUD2Q9BSE4 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC19.62■□□□□ 0.73
HERPUD2Q9BSE4 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC19.62■□□□□ 0.73
HERPUD2Q9BSE4 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC19.62■□□□□ 0.73
HERPUD2Q9BSE4 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC19.62■□□□□ 0.73
HERPUD2Q9BSE4 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HERPUD2Q9BSE4 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HERPUD2Q9BSE4 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HERPUD2Q9BSE4 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HERPUD2Q9BSE4 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HERPUD2Q9BSE4 MADD-208ENST00000405573 1823 ntTSL 5 BASIC19.62■□□□□ 0.73
HERPUD2Q9BSE4 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC19.62■□□□□ 0.73
HERPUD2Q9BSE4 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HERPUD2Q9BSE4 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC19.62■□□□□ 0.73
HERPUD2Q9BSE4 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HERPUD2Q9BSE4 NFYC-AS1-201ENST00000606277 1687 ntBASIC19.62■□□□□ 0.73
HERPUD2Q9BSE4 HEIH-201ENST00000623091 1652 ntBASIC19.62■□□□□ 0.73
HERPUD2Q9BSE4 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HERPUD2Q9BSE4 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC19.61■□□□□ 0.73
HERPUD2Q9BSE4 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
HERPUD2Q9BSE4 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HERPUD2Q9BSE4 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HERPUD2Q9BSE4 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HERPUD2Q9BSE4 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HERPUD2Q9BSE4 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC19.61■□□□□ 0.73
HERPUD2Q9BSE4 NIFKP9-201ENST00000419265 221 ntBASIC19.61■□□□□ 0.73
HERPUD2Q9BSE4 PTPA-216ENST00000432651 857 ntTSL 2 BASIC19.61■□□□□ 0.73
HERPUD2Q9BSE4 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
HERPUD2Q9BSE4 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
HERPUD2Q9BSE4 GLRB-205ENST00000512619 728 ntTSL 3 BASIC19.61■□□□□ 0.73
HERPUD2Q9BSE4 TK2-204ENST00000525974 1178 ntTSL 2 BASIC19.61■□□□□ 0.73
HERPUD2Q9BSE4 DET1-205ENST00000558413 583 ntTSL 4 BASIC19.61■□□□□ 0.73
HERPUD2Q9BSE4 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC19.61■□□□□ 0.73
HERPUD2Q9BSE4 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
HERPUD2Q9BSE4 AC110285.5-201ENST00000611501 352 ntBASIC19.61■□□□□ 0.73
HERPUD2Q9BSE4 AL359736.2-201ENST00000621992 437 ntBASIC19.61■□□□□ 0.73
HERPUD2Q9BSE4 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC19.61■□□□□ 0.73
HERPUD2Q9BSE4 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
HERPUD2Q9BSE4 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HERPUD2Q9BSE4 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC19.61■□□□□ 0.73
HERPUD2Q9BSE4 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC19.61■□□□□ 0.73
HERPUD2Q9BSE4 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
HERPUD2Q9BSE4 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
HERPUD2Q9BSE4 AL133373.2-201ENST00000623187 2828 ntBASIC19.61■□□□□ 0.73
HERPUD2Q9BSE4 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HERPUD2Q9BSE4 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
HERPUD2Q9BSE4 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
HERPUD2Q9BSE4 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HERPUD2Q9BSE4 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HERPUD2Q9BSE4 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC19.6■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms