Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC22.29■■□□□ 1.16
BRF1Q92994 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
BRF1Q92994 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
BRF1Q92994 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
BRF1Q92994 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC22.28■■□□□ 1.16
BRF1Q92994 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC22.28■■□□□ 1.16
BRF1Q92994 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC22.28■■□□□ 1.16
BRF1Q92994 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC22.28■■□□□ 1.16
BRF1Q92994 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC22.28■■□□□ 1.16
BRF1Q92994 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC22.28■■□□□ 1.16
BRF1Q92994 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC22.28■■□□□ 1.16
BRF1Q92994 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC22.28■■□□□ 1.16
BRF1Q92994 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC22.28■■□□□ 1.16
BRF1Q92994 AC083906.6-201ENST00000641366 219 ntBASIC22.28■■□□□ 1.16
BRF1Q92994 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC22.28■■□□□ 1.16
BRF1Q92994 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
BRF1Q92994 AL138781.2-201ENST00000617896 1843 ntBASIC22.28■■□□□ 1.16
BRF1Q92994 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
BRF1Q92994 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
BRF1Q92994 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC22.28■■□□□ 1.16
BRF1Q92994 AC093525.10-201ENST00000625130 1569 ntBASIC22.28■■□□□ 1.16
BRF1Q92994 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC22.28■■□□□ 1.16
BRF1Q92994 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
BRF1Q92994 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
BRF1Q92994 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC22.28■■□□□ 1.16
BRF1Q92994 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC22.28■■□□□ 1.16
BRF1Q92994 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
BRF1Q92994 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
BRF1Q92994 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
BRF1Q92994 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
BRF1Q92994 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
BRF1Q92994 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC22.27■■□□□ 1.16
BRF1Q92994 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC22.27■■□□□ 1.16
BRF1Q92994 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
BRF1Q92994 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC22.27■■□□□ 1.16
BRF1Q92994 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC22.27■■□□□ 1.16
BRF1Q92994 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC22.27■■□□□ 1.16
BRF1Q92994 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC22.27■■□□□ 1.16
BRF1Q92994 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC22.27■■□□□ 1.16
BRF1Q92994 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC22.27■■□□□ 1.16
BRF1Q92994 AP000692.2-201ENST00000608391 879 ntBASIC22.27■■□□□ 1.16
BRF1Q92994 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC22.27■■□□□ 1.16
BRF1Q92994 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC22.27■■□□□ 1.16
BRF1Q92994 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
BRF1Q92994 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC22.27■■□□□ 1.16
BRF1Q92994 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
BRF1Q92994 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
BRF1Q92994 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.15
BRF1Q92994 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
BRF1Q92994 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC22.26■■□□□ 1.15
BRF1Q92994 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC22.26■■□□□ 1.15
BRF1Q92994 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
BRF1Q92994 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
BRF1Q92994 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC22.26■■□□□ 1.15
BRF1Q92994 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC22.26■■□□□ 1.15
BRF1Q92994 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
BRF1Q92994 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
BRF1Q92994 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC22.26■■□□□ 1.15
BRF1Q92994 REXO1L10P-201ENST00000615707 1290 ntBASIC22.26■■□□□ 1.15
BRF1Q92994 REXO1L12P-201ENST00000622156 912 ntBASIC22.26■■□□□ 1.15
BRF1Q92994 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC22.26■■□□□ 1.15
BRF1Q92994 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
BRF1Q92994 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC22.26■■□□□ 1.15
BRF1Q92994 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
BRF1Q92994 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
BRF1Q92994 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
BRF1Q92994 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC22.25■■□□□ 1.15
BRF1Q92994 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
BRF1Q92994 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC22.25■■□□□ 1.15
BRF1Q92994 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
BRF1Q92994 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
BRF1Q92994 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC22.25■■□□□ 1.15
BRF1Q92994 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
BRF1Q92994 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
BRF1Q92994 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC22.25■■□□□ 1.15
BRF1Q92994 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC22.25■■□□□ 1.15
BRF1Q92994 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC22.25■■□□□ 1.15
BRF1Q92994 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
BRF1Q92994 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC22.25■■□□□ 1.15
BRF1Q92994 AC026471.5-201ENST00000615068 467 ntBASIC22.25■■□□□ 1.15
BRF1Q92994 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC22.25■■□□□ 1.15
BRF1Q92994 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC22.25■■□□□ 1.15
BRF1Q92994 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC22.25■■□□□ 1.15
BRF1Q92994 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC22.25■■□□□ 1.15
BRF1Q92994 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
BRF1Q92994 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
BRF1Q92994 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
BRF1Q92994 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
BRF1Q92994 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC22.25■■□□□ 1.15
BRF1Q92994 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC22.24■■□□□ 1.15
BRF1Q92994 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
BRF1Q92994 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
BRF1Q92994 KATNBL1P6-202ENST00000562413 1466 ntBASIC22.24■■□□□ 1.15
BRF1Q92994 USP49-202ENST00000373010 2446 ntTSL 5 BASIC22.24■■□□□ 1.15
BRF1Q92994 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC22.24■■□□□ 1.15
BRF1Q92994 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
BRF1Q92994 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC22.24■■□□□ 1.15
BRF1Q92994 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
BRF1Q92994 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC22.24■■□□□ 1.15
BRF1Q92994 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC22.24■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms