Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
VRK3Q8IV63 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC18.51■□□□□ 0.55
VRK3Q8IV63 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
VRK3Q8IV63 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC18.51■□□□□ 0.55
VRK3Q8IV63 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VRK3Q8IV63 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VRK3Q8IV63 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
VRK3Q8IV63 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VRK3Q8IV63 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
VRK3Q8IV63 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VRK3Q8IV63 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
VRK3Q8IV63 MMP23A-201ENST00000234610 1017 ntBASIC18.5■□□□□ 0.55
VRK3Q8IV63 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VRK3Q8IV63 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VRK3Q8IV63 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VRK3Q8IV63 INGX-201ENST00000359239 846 ntBASIC18.5■□□□□ 0.55
VRK3Q8IV63 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC18.5■□□□□ 0.55
VRK3Q8IV63 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC18.5■□□□□ 0.55
VRK3Q8IV63 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC18.5■□□□□ 0.55
VRK3Q8IV63 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC18.5■□□□□ 0.55
VRK3Q8IV63 GLDC-219ENST00000640208 420 ntTSL 2 BASIC18.5■□□□□ 0.55
VRK3Q8IV63 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
VRK3Q8IV63 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC18.5■□□□□ 0.55
VRK3Q8IV63 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC18.5■□□□□ 0.55
VRK3Q8IV63 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VRK3Q8IV63 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VRK3Q8IV63 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VRK3Q8IV63 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
VRK3Q8IV63 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VRK3Q8IV63 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VRK3Q8IV63 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VRK3Q8IV63 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
VRK3Q8IV63 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
VRK3Q8IV63 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC18.49■□□□□ 0.55
VRK3Q8IV63 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
VRK3Q8IV63 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC18.49■□□□□ 0.55
VRK3Q8IV63 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC18.49■□□□□ 0.55
VRK3Q8IV63 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
VRK3Q8IV63 HIST1H2APS4-201ENST00000362070 348 ntBASIC18.49■□□□□ 0.55
VRK3Q8IV63 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VRK3Q8IV63 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
VRK3Q8IV63 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
VRK3Q8IV63 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC18.49■□□□□ 0.55
VRK3Q8IV63 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC18.49■□□□□ 0.55
VRK3Q8IV63 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
VRK3Q8IV63 AL023803.3-201ENST00000615559 522 ntBASIC18.49■□□□□ 0.55
VRK3Q8IV63 AC010947.1-201ENST00000623454 693 ntBASIC18.49■□□□□ 0.55
VRK3Q8IV63 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC18.49■□□□□ 0.55
VRK3Q8IV63 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
VRK3Q8IV63 AL512353.2-201ENST00000448759 1962 ntBASIC18.49■□□□□ 0.55
VRK3Q8IV63 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VRK3Q8IV63 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC18.49■□□□□ 0.55
VRK3Q8IV63 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VRK3Q8IV63 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VRK3Q8IV63 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VRK3Q8IV63 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VRK3Q8IV63 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
VRK3Q8IV63 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VRK3Q8IV63 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
VRK3Q8IV63 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC18.48■□□□□ 0.55
VRK3Q8IV63 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VRK3Q8IV63 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC18.48■□□□□ 0.55
VRK3Q8IV63 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
VRK3Q8IV63 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
VRK3Q8IV63 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC18.48■□□□□ 0.55
VRK3Q8IV63 GXYLT1P3-201ENST00000453058 1193 ntBASIC18.48■□□□□ 0.55
VRK3Q8IV63 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC18.48■□□□□ 0.55
VRK3Q8IV63 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC18.48■□□□□ 0.55
VRK3Q8IV63 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
VRK3Q8IV63 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VRK3Q8IV63 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
VRK3Q8IV63 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VRK3Q8IV63 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VRK3Q8IV63 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VRK3Q8IV63 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
VRK3Q8IV63 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC18.48■□□□□ 0.55
VRK3Q8IV63 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC18.48■□□□□ 0.55
VRK3Q8IV63 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
VRK3Q8IV63 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VRK3Q8IV63 KRT8P32-201ENST00000512863 1461 ntBASIC18.47■□□□□ 0.55
VRK3Q8IV63 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC18.47■□□□□ 0.55
VRK3Q8IV63 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC18.47■□□□□ 0.55
VRK3Q8IV63 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
VRK3Q8IV63 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VRK3Q8IV63 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VRK3Q8IV63 BUB3-202ENST00000368859 667 ntTSL 3 BASIC18.47■□□□□ 0.55
VRK3Q8IV63 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC18.47■□□□□ 0.55
VRK3Q8IV63 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC18.47■□□□□ 0.55
VRK3Q8IV63 CA15P1-201ENST00000481698 905 ntBASIC18.47■□□□□ 0.55
VRK3Q8IV63 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC18.47■□□□□ 0.55
VRK3Q8IV63 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VRK3Q8IV63 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC18.47■□□□□ 0.55
VRK3Q8IV63 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC18.47■□□□□ 0.55
VRK3Q8IV63 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC18.47■□□□□ 0.55
VRK3Q8IV63 AC083906.6-201ENST00000641366 219 ntBASIC18.47■□□□□ 0.55
VRK3Q8IV63 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC18.47■□□□□ 0.55
VRK3Q8IV63 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
VRK3Q8IV63 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VRK3Q8IV63 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
VRK3Q8IV63 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms