Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC18.79■□□□□ 0.6
ZNF549Q6P9A3 AL031985.4-201ENST00000642138 673 ntBASIC18.79■□□□□ 0.6
ZNF549Q6P9A3 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
ZNF549Q6P9A3 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ZNF549Q6P9A3 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ZNF549Q6P9A3 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ZNF549Q6P9A3 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC18.79■□□□□ 0.6
ZNF549Q6P9A3 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
ZNF549Q6P9A3 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ZNF549Q6P9A3 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
ZNF549Q6P9A3 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
ZNF549Q6P9A3 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC18.79■□□□□ 0.6
ZNF549Q6P9A3 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
ZNF549Q6P9A3 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
ZNF549Q6P9A3 Z98044.1-201ENST00000632503 1764 ntBASIC18.78■□□□□ 0.6
ZNF549Q6P9A3 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
ZNF549Q6P9A3 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
ZNF549Q6P9A3 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC18.78■□□□□ 0.6
ZNF549Q6P9A3 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
ZNF549Q6P9A3 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
ZNF549Q6P9A3 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC18.78■□□□□ 0.6
ZNF549Q6P9A3 MESTP1-201ENST00000404287 994 ntBASIC18.78■□□□□ 0.6
ZNF549Q6P9A3 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
ZNF549Q6P9A3 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC18.78■□□□□ 0.6
ZNF549Q6P9A3 AL158047.1-201ENST00000445918 881 ntBASIC18.78■□□□□ 0.6
ZNF549Q6P9A3 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
ZNF549Q6P9A3 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC18.78■□□□□ 0.6
ZNF549Q6P9A3 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC18.78■□□□□ 0.6
ZNF549Q6P9A3 AC026271.3-201ENST00000571884 352 ntBASIC18.78■□□□□ 0.6
ZNF549Q6P9A3 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC18.78■□□□□ 0.6
ZNF549Q6P9A3 AC130371.2-201ENST00000619443 611 ntBASIC18.78■□□□□ 0.6
ZNF549Q6P9A3 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC18.78■□□□□ 0.6
ZNF549Q6P9A3 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
ZNF549Q6P9A3 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
ZNF549Q6P9A3 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC18.78■□□□□ 0.6
ZNF549Q6P9A3 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC18.78■□□□□ 0.6
ZNF549Q6P9A3 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
ZNF549Q6P9A3 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
ZNF549Q6P9A3 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
ZNF549Q6P9A3 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
ZNF549Q6P9A3 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
ZNF549Q6P9A3 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
ZNF549Q6P9A3 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
ZNF549Q6P9A3 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
ZNF549Q6P9A3 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC18.77■□□□□ 0.6
ZNF549Q6P9A3 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC18.77■□□□□ 0.6
ZNF549Q6P9A3 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
ZNF549Q6P9A3 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
ZNF549Q6P9A3 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
ZNF549Q6P9A3 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC18.77■□□□□ 0.6
ZNF549Q6P9A3 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC18.77■□□□□ 0.6
ZNF549Q6P9A3 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC18.77■□□□□ 0.6
ZNF549Q6P9A3 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
ZNF549Q6P9A3 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
ZNF549Q6P9A3 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
ZNF549Q6P9A3 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
ZNF549Q6P9A3 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC18.77■□□□□ 0.6
ZNF549Q6P9A3 FAM197Y1-201ENST00000421178 764 ntBASIC18.77■□□□□ 0.6
ZNF549Q6P9A3 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC18.77■□□□□ 0.6
ZNF549Q6P9A3 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC18.77■□□□□ 0.6
ZNF549Q6P9A3 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
ZNF549Q6P9A3 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC18.77■□□□□ 0.6
ZNF549Q6P9A3 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
ZNF549Q6P9A3 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
ZNF549Q6P9A3 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC18.77■□□□□ 0.6
ZNF549Q6P9A3 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.59
ZNF549Q6P9A3 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.59
ZNF549Q6P9A3 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC18.77■□□□□ 0.59
ZNF549Q6P9A3 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
ZNF549Q6P9A3 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
ZNF549Q6P9A3 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
ZNF549Q6P9A3 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC18.76■□□□□ 0.59
ZNF549Q6P9A3 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
ZNF549Q6P9A3 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
ZNF549Q6P9A3 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
ZNF549Q6P9A3 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
ZNF549Q6P9A3 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC18.76■□□□□ 0.59
ZNF549Q6P9A3 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
ZNF549Q6P9A3 PRSS44-201ENST00000515154 1146 ntBASIC18.76■□□□□ 0.59
ZNF549Q6P9A3 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC18.76■□□□□ 0.59
ZNF549Q6P9A3 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
ZNF549Q6P9A3 AC011298.2-201ENST00000617989 482 ntBASIC18.76■□□□□ 0.59
ZNF549Q6P9A3 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
ZNF549Q6P9A3 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC18.76■□□□□ 0.59
ZNF549Q6P9A3 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC18.76■□□□□ 0.59
ZNF549Q6P9A3 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC18.76■□□□□ 0.59
ZNF549Q6P9A3 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
ZNF549Q6P9A3 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
ZNF549Q6P9A3 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
ZNF549Q6P9A3 AC138932.1-201ENST00000534164 6830 ntBASIC18.76■□□□□ 0.59
ZNF549Q6P9A3 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
ZNF549Q6P9A3 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
ZNF549Q6P9A3 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
ZNF549Q6P9A3 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
ZNF549Q6P9A3 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC18.76■□□□□ 0.59
ZNF549Q6P9A3 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC18.76■□□□□ 0.59
ZNF549Q6P9A3 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC18.75■□□□□ 0.59
ZNF549Q6P9A3 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC18.75■□□□□ 0.59
ZNF549Q6P9A3 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
ZNF549Q6P9A3 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms