Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP39Q53GS9 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC19.24■□□□□ 0.67
USP39Q53GS9 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
USP39Q53GS9 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
USP39Q53GS9 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
USP39Q53GS9 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC19.23■□□□□ 0.67
USP39Q53GS9 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
USP39Q53GS9 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP39Q53GS9 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP39Q53GS9 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC19.23■□□□□ 0.67
USP39Q53GS9 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP39Q53GS9 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP39Q53GS9 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC19.23■□□□□ 0.67
USP39Q53GS9 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC19.23■□□□□ 0.67
USP39Q53GS9 CD81-212ENST00000526072 1172 ntTSL 5 BASIC19.23■□□□□ 0.67
USP39Q53GS9 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC19.23■□□□□ 0.67
USP39Q53GS9 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC19.23■□□□□ 0.67
USP39Q53GS9 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
USP39Q53GS9 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP39Q53GS9 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP39Q53GS9 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP39Q53GS9 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP39Q53GS9 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP39Q53GS9 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
USP39Q53GS9 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC19.23■□□□□ 0.67
USP39Q53GS9 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP39Q53GS9 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC19.23■□□□□ 0.67
USP39Q53GS9 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC19.23■□□□□ 0.67
USP39Q53GS9 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
USP39Q53GS9 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
USP39Q53GS9 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP39Q53GS9 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC19.22■□□□□ 0.67
USP39Q53GS9 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP39Q53GS9 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP39Q53GS9 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC19.22■□□□□ 0.67
USP39Q53GS9 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
USP39Q53GS9 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC19.22■□□□□ 0.67
USP39Q53GS9 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP39Q53GS9 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC19.22■□□□□ 0.67
USP39Q53GS9 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
USP39Q53GS9 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC19.22■□□□□ 0.67
USP39Q53GS9 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
USP39Q53GS9 STARP1-201ENST00000397973 869 ntBASIC19.22■□□□□ 0.67
USP39Q53GS9 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC19.22■□□□□ 0.67
USP39Q53GS9 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC19.22■□□□□ 0.67
USP39Q53GS9 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP39Q53GS9 LY6E-213ENST00000522528 606 ntTSL 3 BASIC19.22■□□□□ 0.67
USP39Q53GS9 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC19.22■□□□□ 0.67
USP39Q53GS9 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
USP39Q53GS9 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC19.22■□□□□ 0.67
USP39Q53GS9 VPS72-207ENST00000640458 689 ntTSL 5 BASIC19.22■□□□□ 0.67
USP39Q53GS9 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP39Q53GS9 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP39Q53GS9 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
USP39Q53GS9 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
USP39Q53GS9 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC19.22■□□□□ 0.67
USP39Q53GS9 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC19.22■□□□□ 0.67
USP39Q53GS9 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
USP39Q53GS9 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC19.22■□□□□ 0.67
USP39Q53GS9 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP39Q53GS9 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC19.21■□□□□ 0.67
USP39Q53GS9 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC19.21■□□□□ 0.67
USP39Q53GS9 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC19.21■□□□□ 0.67
USP39Q53GS9 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP39Q53GS9 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
USP39Q53GS9 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC19.21■□□□□ 0.67
USP39Q53GS9 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC19.21■□□□□ 0.67
USP39Q53GS9 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
USP39Q53GS9 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC19.21■□□□□ 0.67
USP39Q53GS9 LINC01311-201ENST00000565162 1445 ntBASIC19.21■□□□□ 0.67
USP39Q53GS9 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC19.21■□□□□ 0.67
USP39Q53GS9 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC19.21■□□□□ 0.67
USP39Q53GS9 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC19.21■□□□□ 0.67
USP39Q53GS9 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
USP39Q53GS9 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
USP39Q53GS9 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC19.21■□□□□ 0.67
USP39Q53GS9 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
USP39Q53GS9 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP39Q53GS9 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP39Q53GS9 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
USP39Q53GS9 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC19.21■□□□□ 0.67
USP39Q53GS9 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.66
USP39Q53GS9 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC19.2■□□□□ 0.66
USP39Q53GS9 AL158211.5-201ENST00000623583 2518 ntBASIC19.2■□□□□ 0.66
USP39Q53GS9 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC19.2■□□□□ 0.66
USP39Q53GS9 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP39Q53GS9 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP39Q53GS9 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
USP39Q53GS9 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
USP39Q53GS9 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
USP39Q53GS9 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
USP39Q53GS9 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP39Q53GS9 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP39Q53GS9 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP39Q53GS9 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
USP39Q53GS9 FXN-203ENST00000396366 922 ntTSL 2 BASIC19.2■□□□□ 0.66
USP39Q53GS9 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
USP39Q53GS9 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC19.2■□□□□ 0.66
USP39Q53GS9 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC19.2■□□□□ 0.66
USP39Q53GS9 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms