Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 NIFKP9-201ENST00000419265 221 ntBASIC20.83■□□□□ 0.93
CCDC40Q4G0X9 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CCDC40Q4G0X9 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC20.83■□□□□ 0.93
CCDC40Q4G0X9 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC20.83■□□□□ 0.93
CCDC40Q4G0X9 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
CCDC40Q4G0X9 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC20.83■□□□□ 0.93
CCDC40Q4G0X9 MMD2-204ENST00000612910 778 ntTSL 5 BASIC20.83■□□□□ 0.93
CCDC40Q4G0X9 AC131212.4-201ENST00000623606 975 ntBASIC20.83■□□□□ 0.93
CCDC40Q4G0X9 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
CCDC40Q4G0X9 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC40Q4G0X9 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC20.83■□□□□ 0.92
CCDC40Q4G0X9 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC20.83■□□□□ 0.92
CCDC40Q4G0X9 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC40Q4G0X9 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC20.83■□□□□ 0.92
CCDC40Q4G0X9 AC090340.1-201ENST00000620778 4980 ntBASIC20.83■□□□□ 0.92
CCDC40Q4G0X9 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC40Q4G0X9 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC40Q4G0X9 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC40Q4G0X9 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC20.83■□□□□ 0.92
CCDC40Q4G0X9 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
CCDC40Q4G0X9 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC40Q4G0X9 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC20.82■□□□□ 0.92
CCDC40Q4G0X9 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC40Q4G0X9 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC20.82■□□□□ 0.92
CCDC40Q4G0X9 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC20.82■□□□□ 0.92
CCDC40Q4G0X9 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC40Q4G0X9 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC20.82■□□□□ 0.92
CCDC40Q4G0X9 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC40Q4G0X9 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC40Q4G0X9 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
CCDC40Q4G0X9 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC40Q4G0X9 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC40Q4G0X9 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC40Q4G0X9 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC40Q4G0X9 FAM201B-201ENST00000458407 597 ntBASIC20.82■□□□□ 0.92
CCDC40Q4G0X9 RPPH1-201ENST00000516869 333 ntBASIC20.82■□□□□ 0.92
CCDC40Q4G0X9 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC20.82■□□□□ 0.92
CCDC40Q4G0X9 IRX5-204ENST00000560154 879 ntTSL 5 BASIC20.82■□□□□ 0.92
CCDC40Q4G0X9 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC20.82■□□□□ 0.92
CCDC40Q4G0X9 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC40Q4G0X9 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC40Q4G0X9 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC40Q4G0X9 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC40Q4G0X9 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC40Q4G0X9 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC40Q4G0X9 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC40Q4G0X9 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC20.82■□□□□ 0.92
CCDC40Q4G0X9 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC20.82■□□□□ 0.92
CCDC40Q4G0X9 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
CCDC40Q4G0X9 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC40Q4G0X9 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC20.82■□□□□ 0.92
CCDC40Q4G0X9 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CCDC40Q4G0X9 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC20.82■□□□□ 0.92
CCDC40Q4G0X9 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC40Q4G0X9 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC40Q4G0X9 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC40Q4G0X9 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC20.81■□□□□ 0.92
CCDC40Q4G0X9 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC20.81■□□□□ 0.92
CCDC40Q4G0X9 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC40Q4G0X9 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC20.81■□□□□ 0.92
CCDC40Q4G0X9 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC40Q4G0X9 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC40Q4G0X9 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC40Q4G0X9 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
CCDC40Q4G0X9 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC20.81■□□□□ 0.92
CCDC40Q4G0X9 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC40Q4G0X9 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC40Q4G0X9 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC40Q4G0X9 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC40Q4G0X9 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC40Q4G0X9 TK2-204ENST00000525974 1178 ntTSL 2 BASIC20.81■□□□□ 0.92
CCDC40Q4G0X9 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC40Q4G0X9 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC40Q4G0X9 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC40Q4G0X9 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC40Q4G0X9 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC20.81■□□□□ 0.92
CCDC40Q4G0X9 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC20.81■□□□□ 0.92
CCDC40Q4G0X9 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC40Q4G0X9 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC40Q4G0X9 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC40Q4G0X9 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC40Q4G0X9 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC20.81■□□□□ 0.92
CCDC40Q4G0X9 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
CCDC40Q4G0X9 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC20.81■□□□□ 0.92
CCDC40Q4G0X9 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC40Q4G0X9 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC40Q4G0X9 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CCDC40Q4G0X9 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
CCDC40Q4G0X9 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC20.8■□□□□ 0.92
CCDC40Q4G0X9 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC40Q4G0X9 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC40Q4G0X9 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC40Q4G0X9 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC40Q4G0X9 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC20.8■□□□□ 0.92
CCDC40Q4G0X9 AL031598.1-201ENST00000561511 1773 ntBASIC20.8■□□□□ 0.92
CCDC40Q4G0X9 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC40Q4G0X9 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
CCDC40Q4G0X9 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
CCDC40Q4G0X9 PTPA-216ENST00000432651 857 ntTSL 2 BASIC20.8■□□□□ 0.92
CCDC40Q4G0X9 RPS2P4-201ENST00000476944 856 ntBASIC20.8■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms