Protein–RNA interactions for Protein: Q496Y0

LONRF3, LON peptidase N-terminal domain and RING finger protein 3, humanhuman

Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LONRF3Q496Y0 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
LONRF3Q496Y0 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
LONRF3Q496Y0 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC21.54■■□□□ 1.04
LONRF3Q496Y0 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
LONRF3Q496Y0 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC21.54■■□□□ 1.04
LONRF3Q496Y0 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC21.53■■□□□ 1.04
LONRF3Q496Y0 AC093525.10-201ENST00000625130 1569 ntBASIC21.53■■□□□ 1.04
LONRF3Q496Y0 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
LONRF3Q496Y0 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
LONRF3Q496Y0 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
LONRF3Q496Y0 AC009113.1-201ENST00000570267 2443 ntBASIC21.53■■□□□ 1.04
LONRF3Q496Y0 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
LONRF3Q496Y0 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC21.53■■□□□ 1.04
LONRF3Q496Y0 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC21.53■■□□□ 1.04
LONRF3Q496Y0 AP002982.1-201ENST00000492365 877 ntBASIC21.53■■□□□ 1.04
LONRF3Q496Y0 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC21.53■■□□□ 1.04
LONRF3Q496Y0 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC21.53■■□□□ 1.04
LONRF3Q496Y0 C1QL1P1-201ENST00000568105 661 ntBASIC21.53■■□□□ 1.04
LONRF3Q496Y0 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC21.53■■□□□ 1.04
LONRF3Q496Y0 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC21.53■■□□□ 1.04
LONRF3Q496Y0 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
LONRF3Q496Y0 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
LONRF3Q496Y0 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
LONRF3Q496Y0 AL512353.2-201ENST00000448759 1962 ntBASIC21.53■■□□□ 1.04
LONRF3Q496Y0 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
LONRF3Q496Y0 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
LONRF3Q496Y0 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
LONRF3Q496Y0 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC21.53■■□□□ 1.04
LONRF3Q496Y0 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
LONRF3Q496Y0 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC21.53■■□□□ 1.04
LONRF3Q496Y0 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
LONRF3Q496Y0 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
LONRF3Q496Y0 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
LONRF3Q496Y0 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC21.53■■□□□ 1.04
LONRF3Q496Y0 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC21.52■■□□□ 1.04
LONRF3Q496Y0 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
LONRF3Q496Y0 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
LONRF3Q496Y0 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
LONRF3Q496Y0 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
LONRF3Q496Y0 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
LONRF3Q496Y0 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
LONRF3Q496Y0 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC21.52■■□□□ 1.04
LONRF3Q496Y0 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC21.52■■□□□ 1.04
LONRF3Q496Y0 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
LONRF3Q496Y0 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
LONRF3Q496Y0 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
LONRF3Q496Y0 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
LONRF3Q496Y0 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC21.52■■□□□ 1.04
LONRF3Q496Y0 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
LONRF3Q496Y0 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC21.52■■□□□ 1.04
LONRF3Q496Y0 LINC01023-201ENST00000606054 436 ntBASIC21.52■■□□□ 1.04
LONRF3Q496Y0 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
LONRF3Q496Y0 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
LONRF3Q496Y0 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
LONRF3Q496Y0 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC21.52■■□□□ 1.03
LONRF3Q496Y0 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC21.52■■□□□ 1.03
LONRF3Q496Y0 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
LONRF3Q496Y0 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC21.51■■□□□ 1.03
LONRF3Q496Y0 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
LONRF3Q496Y0 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
LONRF3Q496Y0 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
LONRF3Q496Y0 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
LONRF3Q496Y0 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
LONRF3Q496Y0 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
LONRF3Q496Y0 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
LONRF3Q496Y0 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
LONRF3Q496Y0 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC21.51■■□□□ 1.03
LONRF3Q496Y0 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC21.51■■□□□ 1.03
LONRF3Q496Y0 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC21.51■■□□□ 1.03
LONRF3Q496Y0 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC21.51■■□□□ 1.03
LONRF3Q496Y0 CR392000.1-201ENST00000624770 1228 ntBASIC21.51■■□□□ 1.03
LONRF3Q496Y0 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
LONRF3Q496Y0 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
LONRF3Q496Y0 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
LONRF3Q496Y0 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
LONRF3Q496Y0 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
LONRF3Q496Y0 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC21.51■■□□□ 1.03
LONRF3Q496Y0 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
LONRF3Q496Y0 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
LONRF3Q496Y0 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
LONRF3Q496Y0 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC21.51■■□□□ 1.03
LONRF3Q496Y0 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
LONRF3Q496Y0 GOLGA6L5P-202ENST00000515341 1828 ntBASIC21.5■■□□□ 1.03
LONRF3Q496Y0 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC21.5■■□□□ 1.03
LONRF3Q496Y0 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
LONRF3Q496Y0 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC21.5■■□□□ 1.03
LONRF3Q496Y0 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC21.5■■□□□ 1.03
LONRF3Q496Y0 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
LONRF3Q496Y0 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
LONRF3Q496Y0 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC21.5■■□□□ 1.03
LONRF3Q496Y0 AL160286.2-201ENST00000567150 934 ntBASIC21.5■■□□□ 1.03
LONRF3Q496Y0 AC073195.1-201ENST00000607241 877 ntBASIC21.5■■□□□ 1.03
LONRF3Q496Y0 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC21.5■■□□□ 1.03
LONRF3Q496Y0 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC21.5■■□□□ 1.03
LONRF3Q496Y0 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
LONRF3Q496Y0 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
LONRF3Q496Y0 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
LONRF3Q496Y0 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC21.5■■□□□ 1.03
LONRF3Q496Y0 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
LONRF3Q496Y0 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC21.5■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms