Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
USP41Q3LFD5 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
USP41Q3LFD5 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
USP41Q3LFD5 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
USP41Q3LFD5 RASA4DP-201ENST00000460726 1199 ntBASIC20.12■□□□□ 0.81
USP41Q3LFD5 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC20.12■□□□□ 0.81
USP41Q3LFD5 MIR3180-5-201ENST00000583743 153 ntBASIC20.12■□□□□ 0.81
USP41Q3LFD5 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
USP41Q3LFD5 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
USP41Q3LFD5 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
USP41Q3LFD5 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
USP41Q3LFD5 AIRN-201ENST00000601203 4374 ntBASIC20.12■□□□□ 0.81
USP41Q3LFD5 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
USP41Q3LFD5 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
USP41Q3LFD5 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
USP41Q3LFD5 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
USP41Q3LFD5 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC20.12■□□□□ 0.81
USP41Q3LFD5 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
USP41Q3LFD5 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC20.12■□□□□ 0.81
USP41Q3LFD5 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC20.11■□□□□ 0.81
USP41Q3LFD5 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
USP41Q3LFD5 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC20.11■□□□□ 0.81
USP41Q3LFD5 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC20.11■□□□□ 0.81
USP41Q3LFD5 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
USP41Q3LFD5 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC20.11■□□□□ 0.81
USP41Q3LFD5 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
USP41Q3LFD5 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC20.11■□□□□ 0.81
USP41Q3LFD5 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
USP41Q3LFD5 KRT18P48-201ENST00000434763 852 ntBASIC20.11■□□□□ 0.81
USP41Q3LFD5 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC20.11■□□□□ 0.81
USP41Q3LFD5 TOLLIP-AS1-201ENST00000530897 939 ntBASIC20.11■□□□□ 0.81
USP41Q3LFD5 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
USP41Q3LFD5 AC024243.1-201ENST00000609234 778 ntBASIC20.11■□□□□ 0.81
USP41Q3LFD5 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
USP41Q3LFD5 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC20.11■□□□□ 0.81
USP41Q3LFD5 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC20.11■□□□□ 0.81
USP41Q3LFD5 CLN6-214ENST00000636314 442 ntTSL 3 BASIC20.11■□□□□ 0.81
USP41Q3LFD5 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC20.11■□□□□ 0.81
USP41Q3LFD5 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
USP41Q3LFD5 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC20.11■□□□□ 0.81
USP41Q3LFD5 Z82202.1-201ENST00000623446 1880 ntBASIC20.11■□□□□ 0.81
USP41Q3LFD5 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
USP41Q3LFD5 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC20.11■□□□□ 0.81
USP41Q3LFD5 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
USP41Q3LFD5 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
USP41Q3LFD5 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
USP41Q3LFD5 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
USP41Q3LFD5 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC20.1■□□□□ 0.81
USP41Q3LFD5 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
USP41Q3LFD5 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
USP41Q3LFD5 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC20.1■□□□□ 0.81
USP41Q3LFD5 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC20.1■□□□□ 0.81
USP41Q3LFD5 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
USP41Q3LFD5 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC20.1■□□□□ 0.81
USP41Q3LFD5 HBZP1-201ENST00000354915 429 ntBASIC20.1■□□□□ 0.81
USP41Q3LFD5 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC20.1■□□□□ 0.81
USP41Q3LFD5 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC20.1■□□□□ 0.81
USP41Q3LFD5 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC20.1■□□□□ 0.81
USP41Q3LFD5 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC20.1■□□□□ 0.81
USP41Q3LFD5 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC20.1■□□□□ 0.81
USP41Q3LFD5 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
USP41Q3LFD5 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC20.1■□□□□ 0.81
USP41Q3LFD5 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
USP41Q3LFD5 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
USP41Q3LFD5 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC20.1■□□□□ 0.81
USP41Q3LFD5 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
USP41Q3LFD5 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
USP41Q3LFD5 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
USP41Q3LFD5 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC20.1■□□□□ 0.81
USP41Q3LFD5 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
USP41Q3LFD5 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
USP41Q3LFD5 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC20.09■□□□□ 0.81
USP41Q3LFD5 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
USP41Q3LFD5 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC20.09■□□□□ 0.81
USP41Q3LFD5 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.09■□□□□ 0.81
USP41Q3LFD5 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC20.09■□□□□ 0.81
USP41Q3LFD5 PWWP2AP1-201ENST00000429776 2273 ntBASIC20.09■□□□□ 0.81
USP41Q3LFD5 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
USP41Q3LFD5 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
USP41Q3LFD5 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
USP41Q3LFD5 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
USP41Q3LFD5 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
USP41Q3LFD5 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC20.09■□□□□ 0.81
USP41Q3LFD5 GRAMD4P1-201ENST00000435181 1110 ntBASIC20.09■□□□□ 0.81
USP41Q3LFD5 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
USP41Q3LFD5 HCG4P8-203ENST00000443049 980 ntBASIC20.09■□□□□ 0.81
USP41Q3LFD5 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC20.09■□□□□ 0.81
USP41Q3LFD5 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC20.09■□□□□ 0.81
USP41Q3LFD5 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC20.09■□□□□ 0.81
USP41Q3LFD5 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC20.09■□□□□ 0.81
USP41Q3LFD5 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC20.09■□□□□ 0.81
USP41Q3LFD5 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC20.09■□□□□ 0.81
USP41Q3LFD5 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC20.09■□□□□ 0.81
USP41Q3LFD5 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
USP41Q3LFD5 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
USP41Q3LFD5 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
USP41Q3LFD5 TP73-202ENST00000354437 2140 ntTSL 5 BASIC20.09■□□□□ 0.81
USP41Q3LFD5 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
USP41Q3LFD5 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC20.09■□□□□ 0.81
USP41Q3LFD5 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC20.09■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms