Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
HDAC4P56524 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC19.78■□□□□ 0.76
HDAC4P56524 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC19.78■□□□□ 0.76
HDAC4P56524 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC19.78■□□□□ 0.76
HDAC4P56524 MIR4785-201ENST00000585005 73 ntBASIC19.78■□□□□ 0.76
HDAC4P56524 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC19.78■□□□□ 0.76
HDAC4P56524 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
HDAC4P56524 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HDAC4P56524 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
HDAC4P56524 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
HDAC4P56524 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HDAC4P56524 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HDAC4P56524 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC19.78■□□□□ 0.76
HDAC4P56524 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
HDAC4P56524 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC19.77■□□□□ 0.76
HDAC4P56524 AIRN-201ENST00000601203 4374 ntBASIC19.77■□□□□ 0.76
HDAC4P56524 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC19.77■□□□□ 0.76
HDAC4P56524 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC19.77■□□□□ 0.76
HDAC4P56524 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
HDAC4P56524 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC19.77■□□□□ 0.76
HDAC4P56524 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
HDAC4P56524 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
HDAC4P56524 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC19.77■□□□□ 0.76
HDAC4P56524 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
HDAC4P56524 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
HDAC4P56524 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
HDAC4P56524 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
HDAC4P56524 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
HDAC4P56524 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC19.77■□□□□ 0.76
HDAC4P56524 DHDH-203ENST00000522614 776 ntTSL 5 BASIC19.77■□□□□ 0.76
HDAC4P56524 MIR4497-201ENST00000583208 89 ntBASIC19.77■□□□□ 0.76
HDAC4P56524 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC19.77■□□□□ 0.76
HDAC4P56524 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC19.77■□□□□ 0.76
HDAC4P56524 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC19.77■□□□□ 0.76
HDAC4P56524 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
HDAC4P56524 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
HDAC4P56524 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC19.77■□□□□ 0.76
HDAC4P56524 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
HDAC4P56524 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
HDAC4P56524 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
HDAC4P56524 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC19.77■□□□□ 0.75
HDAC4P56524 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
HDAC4P56524 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC19.77■□□□□ 0.75
HDAC4P56524 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
HDAC4P56524 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC19.76■□□□□ 0.75
HDAC4P56524 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
HDAC4P56524 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
HDAC4P56524 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
HDAC4P56524 CROCCP3-202ENST00000420820 1947 ntBASIC19.76■□□□□ 0.75
HDAC4P56524 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
HDAC4P56524 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
HDAC4P56524 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
HDAC4P56524 AC093503.3-201ENST00000624917 2352 ntBASIC19.76■□□□□ 0.75
HDAC4P56524 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
HDAC4P56524 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HDAC4P56524 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
HDAC4P56524 FDX2-206ENST00000492239 773 ntTSL 2 BASIC19.76■□□□□ 0.75
HDAC4P56524 AC093827.2-201ENST00000512654 315 ntBASIC19.76■□□□□ 0.75
HDAC4P56524 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC19.76■□□□□ 0.75
HDAC4P56524 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC19.76■□□□□ 0.75
HDAC4P56524 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC19.76■□□□□ 0.75
HDAC4P56524 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HDAC4P56524 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
HDAC4P56524 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HDAC4P56524 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC19.76■□□□□ 0.75
HDAC4P56524 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC19.76■□□□□ 0.75
HDAC4P56524 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HDAC4P56524 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
HDAC4P56524 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
HDAC4P56524 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC19.75■□□□□ 0.75
HDAC4P56524 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HDAC4P56524 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC19.75■□□□□ 0.75
HDAC4P56524 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC19.75■□□□□ 0.75
HDAC4P56524 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
HDAC4P56524 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HDAC4P56524 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HDAC4P56524 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
HDAC4P56524 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC19.75■□□□□ 0.75
HDAC4P56524 RBM17P1-201ENST00000453646 1190 ntBASIC19.75■□□□□ 0.75
HDAC4P56524 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
HDAC4P56524 AC097488.1-201ENST00000507834 756 ntBASIC19.75■□□□□ 0.75
HDAC4P56524 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
HDAC4P56524 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC19.75■□□□□ 0.75
HDAC4P56524 SLC25A1P4-201ENST00000567977 778 ntBASIC19.75■□□□□ 0.75
HDAC4P56524 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC19.75■□□□□ 0.75
HDAC4P56524 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HDAC4P56524 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
HDAC4P56524 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
HDAC4P56524 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC19.75■□□□□ 0.75
HDAC4P56524 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
HDAC4P56524 AC004408.2-201ENST00000623613 2777 ntBASIC19.75■□□□□ 0.75
HDAC4P56524 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC19.75■□□□□ 0.75
HDAC4P56524 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
HDAC4P56524 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC19.75■□□□□ 0.75
HDAC4P56524 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
HDAC4P56524 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
HDAC4P56524 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
HDAC4P56524 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HDAC4P56524 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
HDAC4P56524 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 61.9 ms