Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 EMC9-206ENST00000560403 872 ntTSL 2 BASIC18.35■□□□□ 0.53
FOXA1P55317 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC18.35■□□□□ 0.53
FOXA1P55317 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC18.35■□□□□ 0.53
FOXA1P55317 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
FOXA1P55317 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
FOXA1P55317 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
FOXA1P55317 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
FOXA1P55317 AL133373.2-201ENST00000623187 2828 ntBASIC18.35■□□□□ 0.53
FOXA1P55317 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
FOXA1P55317 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
FOXA1P55317 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
FOXA1P55317 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC18.34■□□□□ 0.53
FOXA1P55317 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
FOXA1P55317 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC18.34■□□□□ 0.53
FOXA1P55317 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
FOXA1P55317 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
FOXA1P55317 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
FOXA1P55317 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
FOXA1P55317 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC18.34■□□□□ 0.53
FOXA1P55317 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC18.34■□□□□ 0.53
FOXA1P55317 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC18.34■□□□□ 0.53
FOXA1P55317 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC18.34■□□□□ 0.53
FOXA1P55317 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
FOXA1P55317 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
FOXA1P55317 KRASP1-201ENST00000407852 552 ntBASIC18.34■□□□□ 0.53
FOXA1P55317 SERF2-207ENST00000409614 582 ntTSL 2 BASIC18.34■□□□□ 0.53
FOXA1P55317 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
FOXA1P55317 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC18.34■□□□□ 0.53
FOXA1P55317 MMAB-206ENST00000540016 945 ntTSL 3 BASIC18.34■□□□□ 0.53
FOXA1P55317 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC18.34■□□□□ 0.53
FOXA1P55317 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
FOXA1P55317 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC18.34■□□□□ 0.53
FOXA1P55317 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
FOXA1P55317 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC18.34■□□□□ 0.53
FOXA1P55317 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
FOXA1P55317 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
FOXA1P55317 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
FOXA1P55317 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC18.34■□□□□ 0.53
FOXA1P55317 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC18.34■□□□□ 0.53
FOXA1P55317 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
FOXA1P55317 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
FOXA1P55317 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
FOXA1P55317 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
FOXA1P55317 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC18.33■□□□□ 0.53
FOXA1P55317 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
FOXA1P55317 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC18.33■□□□□ 0.53
FOXA1P55317 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
FOXA1P55317 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
FOXA1P55317 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
FOXA1P55317 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC18.33■□□□□ 0.53
FOXA1P55317 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC18.33■□□□□ 0.53
FOXA1P55317 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC18.33■□□□□ 0.53
FOXA1P55317 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
FOXA1P55317 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
FOXA1P55317 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
FOXA1P55317 ID1-201ENST00000376105 1233 ntBASIC18.33■□□□□ 0.52
FOXA1P55317 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.52
FOXA1P55317 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC18.33■□□□□ 0.52
FOXA1P55317 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC18.33■□□□□ 0.52
FOXA1P55317 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC18.33■□□□□ 0.52
FOXA1P55317 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC18.33■□□□□ 0.52
FOXA1P55317 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC18.33■□□□□ 0.52
FOXA1P55317 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
FOXA1P55317 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC18.33■□□□□ 0.52
FOXA1P55317 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
FOXA1P55317 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
FOXA1P55317 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
FOXA1P55317 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
FOXA1P55317 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
FOXA1P55317 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
FOXA1P55317 MADD-208ENST00000405573 1823 ntTSL 5 BASIC18.33■□□□□ 0.52
FOXA1P55317 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC18.32■□□□□ 0.52
FOXA1P55317 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
FOXA1P55317 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC18.32■□□□□ 0.52
FOXA1P55317 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
FOXA1P55317 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
FOXA1P55317 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
FOXA1P55317 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
FOXA1P55317 AC239809.2-201ENST00000415381 517 ntBASIC18.32■□□□□ 0.52
FOXA1P55317 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC18.32■□□□□ 0.52
FOXA1P55317 LY6E-205ENST00000519611 635 ntTSL 3 BASIC18.32■□□□□ 0.52
FOXA1P55317 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC18.32■□□□□ 0.52
FOXA1P55317 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC18.32■□□□□ 0.52
FOXA1P55317 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
FOXA1P55317 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC18.32■□□□□ 0.52
FOXA1P55317 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC18.32■□□□□ 0.52
FOXA1P55317 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
FOXA1P55317 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
FOXA1P55317 AL499627.1-201ENST00000569373 2188 ntBASIC18.32■□□□□ 0.52
FOXA1P55317 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC18.32■□□□□ 0.52
FOXA1P55317 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
FOXA1P55317 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
FOXA1P55317 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC18.32■□□□□ 0.52
FOXA1P55317 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC18.32■□□□□ 0.52
FOXA1P55317 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
FOXA1P55317 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
FOXA1P55317 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
FOXA1P55317 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
FOXA1P55317 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
FOXA1P55317 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms