Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HNF4AP41235 KRT16P1-201ENST00000399124 1418 ntBASIC18.37■□□□□ 0.53
HNF4AP41235 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HNF4AP41235 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC18.37■□□□□ 0.53
HNF4AP41235 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HNF4AP41235 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HNF4AP41235 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HNF4AP41235 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HNF4AP41235 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HNF4AP41235 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
HNF4AP41235 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HNF4AP41235 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
HNF4AP41235 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC18.36■□□□□ 0.53
HNF4AP41235 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HNF4AP41235 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC18.36■□□□□ 0.53
HNF4AP41235 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HNF4AP41235 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
HNF4AP41235 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC18.36■□□□□ 0.53
HNF4AP41235 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HNF4AP41235 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HNF4AP41235 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HNF4AP41235 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC18.36■□□□□ 0.53
HNF4AP41235 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
HNF4AP41235 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HNF4AP41235 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HNF4AP41235 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC18.36■□□□□ 0.53
HNF4AP41235 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HNF4AP41235 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
HNF4AP41235 CROCCP3-202ENST00000420820 1947 ntBASIC18.36■□□□□ 0.53
HNF4AP41235 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
HNF4AP41235 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
HNF4AP41235 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
HNF4AP41235 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC18.36■□□□□ 0.53
HNF4AP41235 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
HNF4AP41235 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC18.36■□□□□ 0.53
HNF4AP41235 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC18.36■□□□□ 0.53
HNF4AP41235 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HNF4AP41235 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
HNF4AP41235 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HNF4AP41235 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HNF4AP41235 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HNF4AP41235 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HNF4AP41235 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HNF4AP41235 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HNF4AP41235 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
HNF4AP41235 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HNF4AP41235 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
HNF4AP41235 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HNF4AP41235 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HNF4AP41235 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HNF4AP41235 MDFI-202ENST00000373050 809 ntTSL 2 BASIC18.35■□□□□ 0.53
HNF4AP41235 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HNF4AP41235 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC18.35■□□□□ 0.53
HNF4AP41235 AC233702.5-201ENST00000584107 538 ntBASIC18.35■□□□□ 0.53
HNF4AP41235 AC113410.3-201ENST00000623366 203 ntBASIC18.35■□□□□ 0.53
HNF4AP41235 ABBA01031674.1-201ENST00000635145 728 ntBASIC18.35■□□□□ 0.53
HNF4AP41235 AC066615.1-201ENST00000640911 628 ntBASIC18.35■□□□□ 0.53
HNF4AP41235 AL049637.2-201ENST00000641778 930 ntBASIC18.35■□□□□ 0.53
HNF4AP41235 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC18.35■□□□□ 0.53
HNF4AP41235 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
HNF4AP41235 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC18.35■□□□□ 0.53
HNF4AP41235 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC18.35■□□□□ 0.53
HNF4AP41235 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC18.35■□□□□ 0.53
HNF4AP41235 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC18.35■□□□□ 0.53
HNF4AP41235 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HNF4AP41235 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HNF4AP41235 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HNF4AP41235 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
HNF4AP41235 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HNF4AP41235 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC18.34■□□□□ 0.53
HNF4AP41235 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
HNF4AP41235 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
HNF4AP41235 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HNF4AP41235 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HNF4AP41235 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
HNF4AP41235 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HNF4AP41235 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
HNF4AP41235 MIR718-201ENST00000390190 70 ntBASIC18.34■□□□□ 0.53
HNF4AP41235 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
HNF4AP41235 DERL1-203ENST00000419562 918 ntTSL 2 BASIC18.34■□□□□ 0.53
HNF4AP41235 AC012618.2-201ENST00000428058 849 ntBASIC18.34■□□□□ 0.53
HNF4AP41235 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC18.34■□□□□ 0.53
HNF4AP41235 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC18.34■□□□□ 0.53
HNF4AP41235 AC093827.2-201ENST00000512654 315 ntBASIC18.34■□□□□ 0.53
HNF4AP41235 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC18.34■□□□□ 0.53
HNF4AP41235 AC026271.3-201ENST00000571884 352 ntBASIC18.34■□□□□ 0.53
HNF4AP41235 AP001412.1-201ENST00000608405 714 ntBASIC18.34■□□□□ 0.53
HNF4AP41235 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
HNF4AP41235 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HNF4AP41235 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC18.34■□□□□ 0.53
HNF4AP41235 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC18.34■□□□□ 0.53
HNF4AP41235 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
HNF4AP41235 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
HNF4AP41235 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC18.33■□□□□ 0.53
HNF4AP41235 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
HNF4AP41235 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
HNF4AP41235 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
HNF4AP41235 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
HNF4AP41235 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC18.33■□□□□ 0.53
HNF4AP41235 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC18.33■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms